Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30650
(719 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 299 1e-81
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 299 1e-81
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 299 1e-81
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 95 4e-20
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 48 9e-06
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 48 9e-06
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 44 1e-04
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 41 8e-04
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 41 8e-04
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 41 8e-04
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 31 0.83
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 30 1.4
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 30 1.4
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 30 1.9
Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical pr... 29 3.3
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 29 4.4
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 5.8
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 5.8
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 5.8
AF025463-1|AAB71008.3| 871|Caenorhabditis elegans Hypothetical ... 28 7.7
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 299 bits (734), Expect = 1e-81
Identities = 137/178 (76%), Positives = 155/178 (87%)
Frame = +2
Query: 41 IGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 220
+GRVETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG
Sbjct: 230 VGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRG 289
Query: 221 YVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRT 400
V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRT
Sbjct: 290 SVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRT 349
Query: 401 GKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 574
GK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 350 GKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 299 bits (734), Expect = 1e-81
Identities = 137/178 (76%), Positives = 155/178 (87%)
Frame = +2
Query: 41 IGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 220
+GRVETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG
Sbjct: 264 VGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRG 323
Query: 221 YVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRT 400
V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRT
Sbjct: 324 SVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRT 383
Query: 401 GKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 574
GK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 384 GKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 299 bits (734), Expect = 1e-81
Identities = 137/178 (76%), Positives = 155/178 (87%)
Frame = +2
Query: 41 IGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 220
+GRVETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG
Sbjct: 264 VGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRG 323
Query: 221 YVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRT 400
V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRT
Sbjct: 324 SVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRT 383
Query: 401 GKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 574
GK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 384 GKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 95.1 bits (226), Expect = 4e-20
Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 1/179 (0%)
Frame = +2
Query: 41 IGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 220
IG++E+G ++ G +V P +V + + V GDN+ F +K + EL+ G
Sbjct: 356 IGKMESGCVQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGG 415
Query: 221 YVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRT 400
++ S ++ K F A+V+VL H I++GY+ VL +A + +D++T
Sbjct: 416 FIIC-SPDSLAKTGRVFDAEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKGVIATIDKKT 474
Query: 401 GKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAV 574
G+ K +K + I+ L +P +E F+E+P LGRF +RD +T+A+G V+K V
Sbjct: 475 GEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKVLKVV 531
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 47.6 bits (108), Expect = 9e-06
Identities = 33/178 (18%), Positives = 76/178 (42%), Gaps = 1/178 (0%)
Frame = +2
Query: 44 GRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE-LRRG 220
G++E+G ++ V+ +++T +++ + GD + ++ E ++ G
Sbjct: 412 GKIESGEVEKDD-KVYIMSSVTAATVKECANNDGSRHCFAGDYILLTLQGTFEPESIQTG 470
Query: 221 YVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRT 400
V + + + F +++ I G L H+ + C F + +++
Sbjct: 471 SVVVRAGPDTLIPSKKFEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSN 530
Query: 401 GKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 574
G+ + P+ I G +A+V + + +E+F LGR R T+A G+++ V
Sbjct: 531 GEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 47.6 bits (108), Expect = 9e-06
Identities = 33/178 (18%), Positives = 76/178 (42%), Gaps = 1/178 (0%)
Frame = +2
Query: 44 GRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE-LRRG 220
G++E+G ++ V+ +++T +++ + GD + ++ E ++ G
Sbjct: 430 GKIESGEVEKDD-KVYIMSSVTAATVKECANNDGSRHCFAGDYILLTLQGTFEPESIQTG 488
Query: 221 YVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRT 400
V + + + F +++ I G L H+ + C F + +++
Sbjct: 489 SVVVRAGPDTLIPSKKFEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSN 548
Query: 401 GKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 574
G+ + P+ I G +A+V + + +E+F LGR R T+A G+++ V
Sbjct: 549 GEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 606
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 44.0 bits (99), Expect = 1e-04
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 4/135 (2%)
Frame = +2
Query: 44 GRVETGVLKPGTIVVFAPAN----ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 211
G + +G ++ I++ P + + +KS+ + G + F +K + K++
Sbjct: 392 GTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVGIVKCGQSASFALKKIPKKDV 451
Query: 212 RRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 391
R+G V D K P F A+++VL+HP I Y +L + + ++V
Sbjct: 452 RKGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAMLHIGSVRQTATLVSMGKEV- 509
Query: 392 RRTGKSTEVNPKSIK 436
RTG +V K I+
Sbjct: 510 LRTGDRDKVQFKFIR 524
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 41.1 bits (92), Expect = 8e-04
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 6/183 (3%)
Frame = +2
Query: 44 GRVETGVLKPGT-IVVFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKE 208
G++E G+LK G I + T VKSV E + + +A PGD +G ++ + K+
Sbjct: 271 GKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKD 330
Query: 209 LRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKV 388
+RRG V + + K AQ+ VL TP+ + + H+ +
Sbjct: 331 VRRGCVL-LPQGHKHKVTDKVKAQLYVLKE--SEGGAKTPIANYFSEHVF--------SL 379
Query: 389 DRRTGKSTEVNPKS-IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 565
+G S + K + G++A V L + + +E P RF +R +T+ GV
Sbjct: 380 TWDSGASVRIIGKDFVMPGESAEVELSLNSQMFIE------PQQRFTIRKGAKTIGTGVF 433
Query: 566 KAV 574
V
Sbjct: 434 TDV 436
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 41.1 bits (92), Expect = 8e-04
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 6/183 (3%)
Frame = +2
Query: 44 GRVETGVLKPGT-IVVFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKE 208
G++E G+LK G I + T VKSV E + + +A PGD +G ++ + K+
Sbjct: 272 GKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKD 331
Query: 209 LRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKV 388
+RRG V + + K AQ+ VL TP+ + + H+ +
Sbjct: 332 VRRGCVL-LPQGHKHKVTDKVKAQLYVLKE--SEGGAKTPIANYFSEHVF--------SL 380
Query: 389 DRRTGKSTEVNPKS-IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 565
+G S + K + G++A V L + + +E P RF +R +T+ GV
Sbjct: 381 TWDSGASVRIIGKDFVMPGESAEVELSLNSQMFIE------PQQRFTIRKGAKTIGTGVF 434
Query: 566 KAV 574
V
Sbjct: 435 TDV 437
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 41.1 bits (92), Expect = 8e-04
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 6/183 (3%)
Frame = +2
Query: 44 GRVETGVLKPGT-IVVFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKE 208
G++E G+LK G I + T VKSV E + + +A PGD +G ++ + K+
Sbjct: 272 GKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKD 331
Query: 209 LRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKV 388
+RRG V + + K AQ+ VL TP+ + + H+ +
Sbjct: 332 VRRGCVL-LPQGHKHKVTDKVKAQLYVLKE--SEGGAKTPIANYFSEHVF--------SL 380
Query: 389 DRRTGKSTEVNPKS-IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 565
+G S + K + G++A V L + + +E P RF +R +T+ GV
Sbjct: 381 TWDSGASVRIIGKDFVMPGESAEVELSLNSQMFIE------PQQRFTIRKGAKTIGTGVF 434
Query: 566 KAV 574
V
Sbjct: 435 TDV 437
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 31.1 bits (67), Expect = 0.83
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Frame = +2
Query: 44 GRVETGVLKPGTIVVFAPANITT----EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 211
G + G L G V+ P T V S+ +A+ PG+ ++ L
Sbjct: 422 GMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVGCVNPGEAASISLNLPDGVSL 481
Query: 212 RRGYVAGDSKNNPPKGAADFTAQVIVLNH 298
RRG V + + PP +FTA +++L H
Sbjct: 482 RRGMVLAEIDHQPPV-CYEFTANLLLLCH 509
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 41 IGRVETGVLKPGTIVVFAPANIT--TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELR 214
+G +E GVLK G V T T +++ ++++E GD+ G + V ++
Sbjct: 258 VGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGDTVK 317
Query: 215 RGYVAG 232
RG AG
Sbjct: 318 RGMWAG 323
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 41 IGRVETGVLKPGTIVVFAPANIT--TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELR 214
+G +E GVLK G V T T +++ ++++E GD+ G + V ++
Sbjct: 258 VGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGDTVK 317
Query: 215 RGYVAG 232
RG AG
Sbjct: 318 RGMWAG 323
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 68 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 193
KPGTI F P ITTE K H L+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical
protein T23G5.3 protein.
Length = 262
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -3
Query: 636 LPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 484
+P+V + L PPP L +LM P TV + R K P G NS K T
Sbjct: 129 VPIVPRNLLLSKPPPPPPPPLPSLMQPKDTVQIPMR--KPPTGRNSKKIKT 177
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 28.7 bits (61), Expect = 4.4
Identities = 23/83 (27%), Positives = 32/83 (38%)
Frame = -3
Query: 282 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVM 103
T A +AAP GGLF + T P T F T +P TA+ + T +
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAATLGQTPSTVSATPSLP 527
Query: 102 LAGAKTTMVPGFNTPVSTLPIFG 34
+ T+ +P P P G
Sbjct: 528 TTTSTTSTLP---KPAEATPTLG 547
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 332 LDCHTAHIACKFAEIKEKVDRRTGKSTE 415
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 332 LDCHTAHIACKFAEIKEKVDRRTGKSTE 415
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 332 LDCHTAHIACKFAEIKEKVDRRTGKSTE 415
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AF025463-1|AAB71008.3| 871|Caenorhabditis elegans Hypothetical
protein K10B4.3 protein.
Length = 871
Score = 27.9 bits (59), Expect = 7.7
Identities = 22/82 (26%), Positives = 37/82 (45%)
Frame = -2
Query: 370 CKFAGNVGSVAIQYWCVTV*DLTRMVKHNDLSCKICSTLRWVVFGVTSNITTTQFLDGHV 191
CK N+G V+ V +L M ++N +I T+ + + S T+ L HV
Sbjct: 298 CKIIANIGRVSSPLASEAVDELVLMARNNSSDQQILQTVLNEIDAIGSIHPTS--LRRHV 355
Query: 190 LYVETYIVSRYSFLESFVVHLH 125
+ +T SR +E + HL+
Sbjct: 356 SFFQTLPTSR--IIERILAHLN 375
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,831,114
Number of Sequences: 27780
Number of extensions: 368135
Number of successful extensions: 1109
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -