Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30650
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   351   5e-99
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   341   3e-96
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   233   2e-63
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   134   8e-34
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.8  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   6.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.9  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  351 bits (862), Expect = 5e-99
 Identities = 164/180 (91%), Positives = 171/180 (95%)
 Frame = +2

Query: 41  IGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 220
           +GRVETGVLKPG +V FAPA +TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG
Sbjct: 264 VGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 323

Query: 221 YVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRT 400
           YVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFA+IKEK DRR 
Sbjct: 324 YVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFADIKEKCDRRN 383

Query: 401 GKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNF 580
           GK+TE NPKSIKSGDAAIV LVPSKP+C E+FQEFPPLGRFAVRDMRQTVAVGVIKAV F
Sbjct: 384 GKTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQEFPPLGRFAVRDMRQTVAVGVIKAVTF 443


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  341 bits (839), Expect = 3e-96
 Identities = 158/180 (87%), Positives = 170/180 (94%)
 Frame = +2

Query: 41  IGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 220
           +GRVETG+LKPG +V FAPA +TTEVKSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRG
Sbjct: 264 VGRVETGILKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDNVGFNVKNISVKELRRG 323

Query: 221 YVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRT 400
           YVAGDSKN PP+GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEK DRRT
Sbjct: 324 YVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRT 383

Query: 401 GKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNF 580
           GK+TE NPKSIKSGDAAIV L P+KP+CVE+FQEFPPLGRFAVRDMRQTVAVGVIK+V F
Sbjct: 384 GKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVTF 443



 Score = 21.8 bits (44), Expect = 6.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 171 LSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFN 64
           L PG     A   ++T++ SV M   A T  +PG N
Sbjct: 272 LKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDN 307


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  233 bits (569), Expect = 2e-63
 Identities = 108/119 (90%), Positives = 113/119 (94%)
 Frame = +2

Query: 119 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 298
           KSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PP+GAADFTAQVIVLNH
Sbjct: 1   KSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNH 60

Query: 299 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSK 475
           PGQISNGYTPVLDCHTAHIACKFAEIKEK DRRTGK+TE NPKSIKSGDAAIV L P+K
Sbjct: 61  PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 119


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  134 bits (324), Expect = 8e-34
 Identities = 62/68 (91%), Positives = 65/68 (95%)
 Frame = +2

Query: 41  IGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 220
           +GRVETGVLKPG +V FAPA +TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG
Sbjct: 207 VGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 266

Query: 221 YVAGDSKN 244
           YVAGDSKN
Sbjct: 267 YVAGDSKN 274


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 197 SVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 304
           S ++LR  ++A +   + PKG      Q++VLN  G
Sbjct: 283 STRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAG 318


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -2

Query: 97  GGKDNNGTWFQHTSFNSADFWLVTDYK 17
           G K++N      + FN  ++W   D K
Sbjct: 46  GKKNSNSGTINESEFNDENYWQCNDKK 72


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = -2

Query: 400 STTVNFFFDFCKFAGNVGSVAIQYWCVTV*DLTRMVKHNDLSCKICSTLRWVVFGVTSNI 221
           ST+ N  F   K  G  G   +   CVT     R   HN +  + C      V   + N+
Sbjct: 77  STSENKTFPTIKIVGYKGRALVVVSCVTKDQPYRPHPHNLVGKEACKQGVCTVEVSSENM 136

Query: 220 TTT 212
           T T
Sbjct: 137 TVT 139


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = -2

Query: 400 STTVNFFFDFCKFAGNVGSVAIQYWCVTV*DLTRMVKHNDLSCKICSTLRWVVFGVTSNI 221
           ST+ N  F   K  G  G   +   CVT     R   HN +  + C      V   + N+
Sbjct: 77  STSENKTFPTIKIVGYKGRALVVVSCVTKDQPYRPHPHNLVGKEACKQGVCTVEVSSENM 136

Query: 220 TTT 212
           T T
Sbjct: 137 TVT 139


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 316 RLHTSIGLPHCPHC 357
           RLHT     HC HC
Sbjct: 30  RLHTGEKPYHCSHC 43


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 713 LRKHLSVNEVSQLYEKIVLLT 651
           LR+H S+N  + +   IVL+T
Sbjct: 239 LRRHYSMNSTTYVTLTIVLMT 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,278
Number of Sequences: 438
Number of extensions: 4197
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)