Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30650
(719 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 286 1e-77
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 286 1e-77
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 286 1e-77
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 286 1e-77
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 141 5e-34
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 94 1e-19
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 78 7e-15
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 52 5e-07
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 45 6e-05
At4g27900.2 68417.m04005 expressed protein 32 0.44
At4g27900.1 68417.m04004 expressed protein 32 0.44
At4g29900.1 68417.m04254 calcium-transporting ATPase, plasma mem... 29 4.1
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 29 4.1
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 28 5.4
At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein /... 28 5.4
At4g01910.1 68417.m00251 DC1 domain-containing protein contains ... 27 9.5
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 286 bits (701), Expect = 1e-77
Identities = 126/179 (70%), Positives = 157/179 (87%)
Frame = +2
Query: 41 IGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 220
+GRVETG++KPG +V FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RG
Sbjct: 252 VGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRG 311
Query: 221 YVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRT 400
YVA +SK++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+
Sbjct: 312 YVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRS 371
Query: 401 GKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 577
GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 372 GKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 286 bits (701), Expect = 1e-77
Identities = 126/179 (70%), Positives = 157/179 (87%)
Frame = +2
Query: 41 IGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 220
+GRVETG++KPG +V FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RG
Sbjct: 252 VGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRG 311
Query: 221 YVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRT 400
YVA +SK++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+
Sbjct: 312 YVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRS 371
Query: 401 GKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 577
GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 372 GKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 286 bits (701), Expect = 1e-77
Identities = 126/179 (70%), Positives = 157/179 (87%)
Frame = +2
Query: 41 IGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 220
+GRVETG++KPG +V FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RG
Sbjct: 252 VGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRG 311
Query: 221 YVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRT 400
YVA +SK++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+
Sbjct: 312 YVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRS 371
Query: 401 GKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 577
GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 372 GKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 286 bits (701), Expect = 1e-77
Identities = 126/179 (70%), Positives = 157/179 (87%)
Frame = +2
Query: 41 IGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 220
+GRVETG++KPG +V FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RG
Sbjct: 252 VGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRG 311
Query: 221 YVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRT 400
YVA +SK++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+
Sbjct: 312 YVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRS 371
Query: 401 GKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 577
GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 372 GKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 141 bits (341), Expect = 5e-34
Identities = 61/95 (64%), Positives = 77/95 (81%)
Frame = +2
Query: 290 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVP 469
+NH GQI NGYTPVLDCHT+HIA KF+EI K+D RTG E PK +K+ +AAI+N+ P
Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTP 60
Query: 470 SKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 574
+KP+ VE++ +PPLGRFA+RDMRQTV VGVIK+V
Sbjct: 61 TKPMVVEAYSAYPPLGRFAIRDMRQTVGVGVIKSV 95
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 93.9 bits (223), Expect = 1e-19
Identities = 48/177 (27%), Positives = 91/177 (51%), Gaps = 2/177 (1%)
Frame = +2
Query: 41 IGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 220
+G+VE+G ++ G +V P +V ++ + ++ A PG+N+ + + +++ G
Sbjct: 347 MGKVESGSIREGDSLVVMPNKEQVKVVAIYCDEDKVKRAGPGENLRVRITGIEDEDILSG 406
Query: 221 YVAGDSKNNPPKGAADFTAQVIVLN--HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDR 394
+V S NP +F AQ+ +L + GY +L H C+ E+K ++D
Sbjct: 407 FVLS-SIVNPVPAVTEFVAQLQILELLDNAIFTAGYKAILHIHAVVEECEIIELKSQIDL 465
Query: 395 RTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 565
+T K + +K+G A + + + +C+E F +FP LGRF +R +T+AVG +
Sbjct: 466 KTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKFSDFPQLGRFTLRTEGKTIAVGKV 522
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 77.8 bits (183), Expect = 7e-15
Identities = 47/177 (26%), Positives = 86/177 (48%)
Frame = +2
Query: 44 GRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGY 223
G++E G ++PG+ V+ P+ ++S+E +A A GDNV ++ + ++ G
Sbjct: 488 GKLEAGAVRPGSKVMVMPSGDQGTIRSLERDSQACTIARAGDNVALALQGIDANQVMAGD 547
Query: 224 VAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTG 403
V + P A V+VL I G H A A ++ +D +TG
Sbjct: 548 VLCHP-DFPVSVATHLELMVLVLEGATPILLGSQLEFHVHHAKEAATVVKLVAMLDPKTG 606
Query: 404 KSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 574
+ T+ +P+ + + +A++ + P+CVE+F E LGR +R +TVA+G + +
Sbjct: 607 QPTKKSPRCLTAKQSAMLEVSLQNPVCVETFSESRALGRVFLRSSGRTVAMGKVTRI 663
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 51.6 bits (118), Expect = 5e-07
Identities = 49/182 (26%), Positives = 73/182 (40%), Gaps = 5/182 (2%)
Frame = +2
Query: 44 GRVETGVLKPGTIVVFAPANITTE--VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRR 217
GRVE G +K G V T V VEM + L EA+ GDNVG ++ + +++R
Sbjct: 307 GRVERGTVKVGETVDLVGLRETRSYTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQR 366
Query: 218 GYVAGDSKNNPPKGAADFTAQVIVLNHPGQIS---NGYTPVLDCHTAHIACKFAEIKEKV 388
G V + P + V+ G+ S GY P T + K +I
Sbjct: 367 GMVLAKPGSITPHTKFEAIIYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTKIMNDK 426
Query: 389 DRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 568
D + K + GD + + P+ E RFA+R+ +TV GVI
Sbjct: 427 DEES--------KMVMPGDRVKIVVELIVPVACEQGM------RFAIREGGKTVGAGVIG 472
Query: 569 AV 574
+
Sbjct: 473 TI 474
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 44.8 bits (101), Expect = 6e-05
Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 7/184 (3%)
Frame = +2
Query: 44 GRVETGVLKPGTIVVFAPAN-----ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 208
GR+E GV+K G V + + V VEM + L GDNVG ++ + ++
Sbjct: 287 GRIEQGVIKVGEEVEILGLREGGVPLKSTVTGVEMFKKILDNGQAGDNVGLLLRGLKRED 346
Query: 209 LRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKV 388
++RG V +K K F A++ VL +T + + A+I KV
Sbjct: 347 IQRGMVI--AKPGSCKTYKKFEAEIYVLTK--DEGGRHTAFFSNYRPQFYLRTADITGKV 402
Query: 389 DRRTGKSTEVNPKSIKSGD--AAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 562
+ N K + GD A+ L+ PL E+ Q RFA+R+ +TV GV
Sbjct: 403 E------LPENVKMVMPGDNVTAVFELIMPVPL--ETGQ------RFALREGGRTVGAGV 448
Query: 563 IKAV 574
+ V
Sbjct: 449 VSKV 452
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.44
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 422 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 514
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.44
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 422 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 514
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g29900.1 68417.m04254 calcium-transporting ATPase, plasma
membrane-type, putative / Ca2+-ATPase, putative (ACA10)
identical to SP|Q9SZR1 Potential calcium-transporting
ATPase 10, plasma membrane-type (EC 3.6.3.8)
(Ca(2+)-ATPase isoform 10) {Arabidopsis thaliana};
similar to SP|Q9LF79 Calcium-transporting ATPase 8,
plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform
8) {Arabidopsis thaliana}
Length = 1069
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 162 GTASWRASWCISTDLTSVVMLAGAKTTMVPGFNT 61
G + WR W S DLT ++++ A ++ G T
Sbjct: 178 GRSFWRFVWEASQDLTLIILIVAAVASLALGIKT 211
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -3
Query: 183 LKPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNTP 58
L+P+LS + C+S LT V ML+ A+TT++P + P
Sbjct: 428 LEPSLSRTLIEANETGCLSQALTVVAMLS-AETTLLPARSKP 468
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 362 KFAEIKEKVDRRTGKSTEVNPKSI 433
+F + KEK+DR GK E+N K +
Sbjct: 258 RFPKPKEKIDREGGKPLEINVKKL 281
>At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Salix gilgiana] GI:6714524; contains
PF00295: Glycosyl hydrolases family 28
(polygalacturonases)
Length = 414
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = -2
Query: 424 WVDFSRFTSTTVNFFFDFCKFAGNVGSVAIQYWCVTV*DLTRMVKHNDLSCKICSTLRWV 245
W + +S++VN +F+ VGS+ C V +LT VK + K S W+
Sbjct: 58 WDKACKSSSSSVNLIIPRGEFS--VGSLRFSGPCTNVSNLTVRVKASTDLSKYRSGGGWI 115
Query: 244 VFGVTSNITTT 212
FG + +T T
Sbjct: 116 QFGWINGLTLT 126
>At4g01910.1 68417.m00251 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 61 CVETRYHCCLCPRQHHY*SQIC 126
C R+HC LC R+ +Y S C
Sbjct: 73 CSNLRFHCDLCGRRTNYLSYYC 94
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,873,100
Number of Sequences: 28952
Number of extensions: 339466
Number of successful extensions: 992
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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