Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30647
         (358 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     24   0.41 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   3.8  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    20   6.6  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 24.2 bits (50), Expect = 0.41
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 285 GGASSGEVR*PKNIDDPHEDTIK 353
           GG S+G +    NI DP +D  K
Sbjct: 220 GGGSAGSLEDDDNISDPEDDDDK 242


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 277 C*KEAHHQERCGNLRTLTTPTKI 345
           C ++   Q+     RT T+PTK+
Sbjct: 182 CRQQLQQQQNKSASRTTTSPTKV 204


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -2

Query: 99  SSPPRDAFFHHPPLLLCW 46
           S P   AFFH   L L W
Sbjct: 49  SLPTNPAFFHPGLLPLAW 66


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,579
Number of Sequences: 336
Number of extensions: 540
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7193380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)