Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30647
         (358 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45150.1 68418.m05543 ribonuclease III family protein similar...    26   8.5  
At3g06850.2 68416.m00813 branched chain alpha-keto acid dehydrog...    26   8.5  
At3g06850.1 68416.m00812 branched chain alpha-keto acid dehydrog...    26   8.5  

>At5g45150.1 68418.m05543 ribonuclease III family protein similar to
           CAF protein (RNA helicase/RNAseIII) [Arabidopsis
           thaliana] GI:6102610; contains Pfam profiles PF00035:
           Double-stranded RNA binding motif, PF00636 RNase3 domain
          Length = 957

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 286 EAHHQERCGNLRTLTTPTKILLR 354
           + H  E    +R +TT TKILLR
Sbjct: 181 DKHGSESTSGIRKMTTSTKILLR 203


>At3g06850.2 68416.m00813 branched chain alpha-keto acid
          dehydrogenase E2 subunit (din3) identical to branched
          chain alpha-keto acid dehydrogenase E2 subunit (din3)
          [Arabidopsis thaliana] GI:7021284
          Length = 483

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 99 SSPPRDAFFHHPPLLLCW 46
          SSP    FF HPP L+ W
Sbjct: 37 SSPASRPFFVHPPTLMKW 54


>At3g06850.1 68416.m00812 branched chain alpha-keto acid
          dehydrogenase E2 subunit (din3) identical to branched
          chain alpha-keto acid dehydrogenase E2 subunit (din3)
          [Arabidopsis thaliana] GI:7021284
          Length = 483

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 99 SSPPRDAFFHHPPLLLCW 46
          SSP    FF HPP L+ W
Sbjct: 37 SSPASRPFFVHPPTLMKW 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,844,895
Number of Sequences: 28952
Number of extensions: 51921
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)