Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30642
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0341 - 42855667-42855849,42855933-42855981,42856165-428562... 153 9e-41
07_01_0874 - 7261191-7261274,7262291-7262440,7262769-7262916,726... 62 3e-10
02_04_0245 + 21262645-21262754,21262851-21262997,21263100-212631... 34 0.094
08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675 32 0.50
01_01_0896 + 7060431-7061390,7063562-7064191 31 1.2
12_01_0572 + 4684050-4684243,4684332-4684426,4684686-4685404 29 2.7
12_01_0515 + 4081373-4081622,4081725-4081867,4082061-4082219,408... 29 3.5
06_03_0298 - 19272257-19273714 29 3.5
03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-76... 29 3.5
01_06_1031 - 33945681-33945822,33946502-33946641,33946748-339469... 29 3.5
05_05_0339 + 24213179-24213821,24214402-24214623,24215035-242152... 29 4.7
02_04_0363 + 22369461-22370127,22370240-22370310,22370412-223709... 28 6.2
>01_07_0341 -
42855667-42855849,42855933-42855981,42856165-42856219,
42856290-42856410,42856495-42856532,42856612-42856675,
42856778-42856885,42857066-42857187,42857544-42857616,
42857700-42857776,42858521-42858632
Length = 333
Score = 153 bits (371), Expect(2) = 9e-41
Identities = 69/130 (53%), Positives = 93/130 (71%), Gaps = 1/130 (0%)
Frame = +1
Query: 100 MADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIE-GKKLTEIIN 276
M + KN V ++GSGNWGS ++++ N A L +F D V MWV+EEI+ GKKL+E IN
Sbjct: 1 MENGHAKNLVAVIGSGNWGSVASRLIASNTAKLPSFHDEVRMWVFEEILPTGKKLSESIN 60
Query: 277 ETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAA 456
+ +EN KYLPG KL +NV+A PD+ A KDA++L+FV PHQFV IC L+GK++P
Sbjct: 61 QANENCKYLPGIKLGANVIADPDLENAVKDANMLVFVTPHQFVEGICKKLVGKLRPGTEG 120
Query: 457 LSLIKGFDIA 486
+SLIKG +IA
Sbjct: 121 ISLIKGMEIA 130
Score = 31.9 bits (69), Expect(2) = 9e-41
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 577 EVAEEKFCETTIGC-RDVMLAPLMRDIIQTDYFRVVVVDD 693
E+A EKF E TIG +D +A + T YF V VV+D
Sbjct: 128 EIAVEKFSEATIGYKKDKEVATRWAKLFTTPYFLVSVVED 167
>07_01_0874 -
7261191-7261274,7262291-7262440,7262769-7262916,
7263136-7263259,7263452-7263653,7263743-7263848,
7263979-7264442
Length = 425
Score = 62.5 bits (145), Expect = 3e-10
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 3/156 (1%)
Frame = +1
Query: 124 KVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKLTEIINETHENVKYL 303
KV ++G G++G+A+A V A L V+M + ++++ IN +H N KYL
Sbjct: 109 KVVVLGGGSFGTAMAAQVAAKKADLE-----VSMLLRDDLV-----CRSINHSHINCKYL 158
Query: 304 PGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDI 483
H+LP N+ A +A AD VP QF + + + P +SL KG ++
Sbjct: 159 RDHRLPENITATTSASDALAGADFCFHAVPVQFSSSFLEGISTHVDPKLPFISLSKGLEL 218
Query: 484 AEGGGIDLISHIITRCL---KIPCAVLMGANIASEV 582
+ +S II + L + P VL G + A E+
Sbjct: 219 ---NTLRTMSQIIPQALGNPRQPFIVLSGPSFAIEL 251
>02_04_0245 +
21262645-21262754,21262851-21262997,21263100-21263156,
21263256-21263442,21264700-21264925,21265474-21266003
Length = 418
Score = 34.3 bits (75), Expect = 0.094
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 82 DCNILDMADKQPKNKVCIVGSGNWGSAIAKIVGRNAAS 195
DC +L MAD ++G W S +A+ VG A S
Sbjct: 152 DCTVLTMADDSTIKAKVVIGCDGWNSVVARYVGLGAPS 189
>08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675
Length = 264
Score = 31.9 bits (69), Expect = 0.50
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -3
Query: 619 DNQWSFRRIFPQQPPMQYWLPL 554
D++W R+F +QPP+++WL +
Sbjct: 93 DSEWVICRVFKKQPPIEHWLEM 114
>01_01_0896 + 7060431-7061390,7063562-7064191
Length = 529
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -3
Query: 637 EPALRPDNQWSFRRIFPQQPPMQYWLPLIQHREFLGIL 524
+PA R D RR P PP + LPL+ H LG L
Sbjct: 29 KPARRDDGDGGMRRRLPPSPP--WGLPLLGHLHLLGAL 64
>12_01_0572 + 4684050-4684243,4684332-4684426,4684686-4685404
Length = 335
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 505 LISHIITRCLKIPCAVLMGANIASEVAEEKFCETTIGCRDVMLAPLMRDIIQ 660
++SH I + L PCA + A I E+ + C RDV + M I++
Sbjct: 14 MLSHHIQKDLTKPCAKKVTAVIMDEIGDRNLCALIDESRDVSIKEQMGVILR 65
>12_01_0515 +
4081373-4081622,4081725-4081867,4082061-4082219,
4082339-4082518,4082616-4082845,4082959-4083099,
4083366-4083420
Length = 385
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -2
Query: 521 IICDIRSMPPPSAISNPLIKDRAAAVGFIFPSKV 420
++ ++ +PPP + P++ +RA G +FP V
Sbjct: 67 VVALLKPLPPPKTVRYPVLFERAWGFGRLFPCDV 100
>06_03_0298 - 19272257-19273714
Length = 485
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 118 KNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTM---WVYE 237
K KVC+VG G G A A+ + R +S E R + W+Y+
Sbjct: 2 KKKVCVVGGGLVGLAAARELQREGHDVSVLEQRGGVGGQWLYD 44
>03_01_0096 +
763850-764027,764873-765189,765262-765433,765513-765586,
765658-765835,765917-766026,766122-766221,766305-766391,
766505-766681,766847-767120,767201-767362,767450-767665,
767744-767781,768044-768102,768214-768339,768415-768540,
768642-768695,768789-768851,768924-768986,769079-769141,
769232-769732
Length = 1045
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +1
Query: 163 IAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKLTEIINETHENVK 297
++K++G ++ ED + + YEE+ + KKL I+ ET N++
Sbjct: 366 LSKMIGAVQTLVAQCED-LKLKYYEEMAKRKKLHNIVEETKGNIR 409
>01_06_1031 -
33945681-33945822,33946502-33946641,33946748-33946995,
33947355-33947576,33948188-33948839
Length = 467
Score = 29.1 bits (62), Expect = 3.5
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 8/129 (6%)
Frame = +1
Query: 337 VPDVVEAAKDADLLIFVVPHQFVRTICSTL--LGKIKPTAAA-LSLIKGFDIAEGGGIDL 507
V ++ EA DAD++I +P R + + K + TA LSL KG + + +
Sbjct: 148 VTNLQEAVWDADIVINGLPSTDTREVFGEIGRYWKERITAPIILSLAKGIEASLDPLPRI 207
Query: 508 IS--HIITRCLKIPCAVLM---GANIASEVAEEKFCETTIGCRDVMLAPLMRDIIQTDYF 672
I+ +I+ +P ++ G NIASE+ +++ I D PL + + Q +
Sbjct: 208 ITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAKFLRQPHF- 266
Query: 673 RVVVVDDED 699
+V D+ D
Sbjct: 267 --IVWDNSD 273
>05_05_0339 +
24213179-24213821,24214402-24214623,24215035-24215282,
24215385-24215524,24215579-24215753
Length = 475
Score = 28.7 bits (61), Expect = 4.7
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 9/130 (6%)
Frame = +1
Query: 337 VPDVVEAAKDADLLIFVVPHQFVRTICSTL----LGKIKPTAAALSLIKGFDIAEGGGID 504
V ++ EA DAD++I +P R + + +I+P +SL KG + +
Sbjct: 145 VTNLQEAVWDADIVINGLPSTETREVFGEIGRYWKERIRPPVI-ISLAKGIEASIDPVPR 203
Query: 505 LIS--HIITRCLKIPCAVLM---GANIASEVAEEKFCETTIGCRDVMLAPLMRDIIQTDY 669
+I+ +I+ +P ++ G NIASE+ +++ I D PL + + Q +
Sbjct: 204 IITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAKFLRQPHF 263
Query: 670 FRVVVVDDED 699
+V D+ D
Sbjct: 264 ---IVWDNSD 270
>02_04_0363 +
22369461-22370127,22370240-22370310,22370412-22370978,
22371056-22371301
Length = 516
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +1
Query: 97 DMADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSNFE---DRVTMWVYEE 240
D+ + KVC++G+G G A A+ + R +++ E D W+Y++
Sbjct: 7 DVGKPRASRKVCVIGAGMAGLAAARELRREGHAVTVLEQAGDVGGQWLYDD 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,799,216
Number of Sequences: 37544
Number of extensions: 330431
Number of successful extensions: 954
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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