Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30641
(783 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.) 114 9e-26
SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 7e-22
SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05) 84 1e-16
SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10) 75 5e-14
SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 2e-12
SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 2e-08
SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8) 49 5e-06
SB_36121| Best HMM Match : CH (HMM E-Value=0.0017) 45 6e-05
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_53975| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09) 39 0.005
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 36 0.049
SB_47687| Best HMM Match : SCP (HMM E-Value=1.8e-16) 33 0.26
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22) 33 0.34
SB_15403| Best HMM Match : CH (HMM E-Value=0) 33 0.34
SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_56324| Best HMM Match : ASC (HMM E-Value=1.3e-14) 30 2.4
SB_58465| Best HMM Match : zf-B_box (HMM E-Value=0.00022) 29 3.2
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_52622| Best HMM Match : Ank (HMM E-Value=1.2e-05) 29 5.6
SB_54206| Best HMM Match : SET (HMM E-Value=0.029) 28 7.4
SB_28876| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 7.4
SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0) 28 9.8
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_29928| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_47464| Best HMM Match : RVT_1 (HMM E-Value=0.012) 28 9.8
SB_42674| Best HMM Match : DUF26 (HMM E-Value=1) 28 9.8
>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 114 bits (274), Expect = 9e-26
Identities = 77/183 (42%), Positives = 105/183 (57%), Gaps = 8/183 (4%)
Frame = +1
Query: 70 VRAKIASKRNPEKEKEAQEWIEGVLGAKF--PPG--ELFEDVLKDGTVLCQLINKLKPGS 237
V+A I SK +P KE+EA++WI+ VLG G + LKDG VLC+L N+L G
Sbjct: 420 VKAGIDSKYDPTKEEEARKWIDTVLGESIFGENGGVDTVHQTLKDGQVLCRLANRL--GG 477
Query: 238 VPKINTTGGQFKMMENITNFQSAIKA-YGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRE 414
KIN FK MENI NF S I+ GV D+FQTVDL+EK ++ V+ + A+GR
Sbjct: 478 DLKINQQKMPFKQMENIGNFLSFIENNLGVAKNDLFQTVDLYEKSNMWNVICCIHAVGRR 537
Query: 415 TYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVI-GLQAG--SNKGATQSGQNLGAGR 585
Y + P LGPK + + R F++ L G+T+I Q G + AT SGQ+ G R
Sbjct: 538 AYSLGK-DVPQLGPKESTKNPRQFTERQLNEGKTIINSFQMGPAAKNVATASGQSFGRQR 596
Query: 586 KIL 594
+I+
Sbjct: 597 QII 599
>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 101 bits (242), Expect = 7e-22
Identities = 60/146 (41%), Positives = 87/146 (59%), Gaps = 4/146 (2%)
Frame = +1
Query: 88 SKRNPEKEKEAQEWIEGVLGAKFPPGELFED----VLKDGTVLCQLINKLKPGSVPKINT 255
+K + + +A WIEG+LG + G+ D VLKDG VLC++ NKL G KIN+
Sbjct: 62 AKYDSDLAAQATAWIEGILGERVFGGKTGADDVHEVLKDGQVLCRVANKL--GGNIKINS 119
Query: 256 TGGQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRETYRHAEW 435
+ FKMMEN F GVP D+FQTVDL+EK+++ V++ + ALGR+ + +
Sbjct: 120 SKMAFKMMENTGKFLEFCDTIGVPKTDMFQTVDLYEKQNMPGVINGIHALGRKAHSTGK- 178
Query: 436 SGPCLGPKPADECKRDFSDEVLKAGQ 513
+ LGPK A R+F++E +AGQ
Sbjct: 179 TCLALGPKEASANPREFTEEQRRAGQ 204
>SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05)
Length = 195
Score = 83.8 bits (198), Expect = 1e-16
Identities = 61/152 (40%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +1
Query: 79 KIASKRNPEKEKEAQEWIEGVLGAK-FPPGELFEDV---LKDGTVLCQLINKLKPGSVPK 246
KI K +P++E+EA+ WIE VLG K F E +DV LKDG +L +L KL G+ K
Sbjct: 17 KILEKYDPQQEEEARIWIEAVLGEKVFGGAEGPDDVQKVLKDGKILARLAIKL--GAKIK 74
Query: 247 INTTGGQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRETYRH 426
+N FK MENI NF S GV D FQT DL+ D A + S +
Sbjct: 75 VNEQNMPFKQMENIGNFLSHCGHLGVASGDQFQTADLY---DNANMTSCQLIKDLDI--- 128
Query: 427 AEWSGPCLGPKPADECKRDFSDEVLKAGQTVI 522
P LGPK A+ R+F++E L+AG++++
Sbjct: 129 -----PTLGPKEAEANVREFTEEQLRAGESIL 155
>SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)
Length = 172
Score = 75.4 bits (177), Expect = 5e-14
Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Frame = +1
Query: 52 MSLERQVRAKIASKRNP---EKEKEAQEWIEGVLGAKF--PPGELFEDVLKDGTVLCQLI 216
+S E +K + P ++ K + WIEG F + F++ LK G VLC+L
Sbjct: 45 VSKENLKTSKFIMSKKPWPMDRAKVVRMWIEGKTSCNFGGDTADDFQNTLKSGVVLCKLA 104
Query: 217 NKLKPGSVPKINTTGGQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQV 384
N ++PG++ KIN F MMENI NF + ++ GV F T+DL+E K++ QV
Sbjct: 105 NAIQPGAIKKINNAKMNFMMMENIENFCNFVQTKGVASQYQFVTIDLFEGKNMHQV 160
>SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 70.1 bits (164), Expect = 2e-12
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 10/118 (8%)
Frame = +1
Query: 61 ERQVRAKIASKRNPEKEKEAQEWIEGVLGAKFP---------PGELFEDVLKDGTVLCQL 213
E+ ++ +K E E A+ W+E + G PGE F + L+ G +LC++
Sbjct: 259 EKNNVGQVDAKYPKELEGNARRWVETMYGDTVAWGEERPNQRPGETFAEPLRSGVILCKI 318
Query: 214 INKLKPGSVPKINTTGGQFKMMENITNF-QSAIKAYGVPDIDVFQTVDLWEKKDIAQV 384
NK+K ++PKI + F M ENI+ F + G+ +++FQTVDL+E++++ V
Sbjct: 319 ANKIKSNAIPKIGESNKSFVMQENISKFLDFCERVLGLDRLNLFQTVDLFERQNVGMV 376
Score = 37.9 bits (84), Expect = 0.009
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Frame = +1
Query: 49 NMSLERQVRAKIASKRNPEKEKEAQEWIEGVLGAKFP---------PGELFEDVLKDGTV 201
+ L +V KI SK + E E + ++W+E +LG PGE F D + DG V
Sbjct: 14 SFGLTAEVNRKIQSKYDTELEMQCRDWLEKMLGENIEWGVETEYSRPGESFADGIFDGIV 73
Query: 202 LC 207
LC
Sbjct: 74 LC 75
Score = 37.1 bits (82), Expect = 0.016
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Frame = +1
Query: 211 LINKLKPGSVPKIN-TTGGQF---KMMENITNFQSAIKA--YGVPDIDVFQTVDLWEKKD 372
++N++ PG++ KI+ GG+F +++ENI F A + + +D+F DL+EK +
Sbjct: 203 VMNEVFPGAISKIHGINGGRFHGFQILENIEKFLKACQGEPFNCNVVDLFSPGDLYEKNN 262
Query: 373 IAQV 384
+ QV
Sbjct: 263 VGQV 266
>SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 56.8 bits (131), Expect = 2e-08
Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 11/125 (8%)
Frame = +1
Query: 64 RQVRAKIASKRNPEKEKEAQEWIE--GVLGAKF----PPGELFE--DVLKDGTVLCQLIN 219
R A +S R+ E+ K A++W+ GVL A P LF+ L+DG +LCQ+ N
Sbjct: 7 RTASALSSSGRDVEEWKMARDWMISIGVLPAHGRVTDPNFTLFDFAQSLRDGVLLCQVAN 66
Query: 220 KLKPGSVPKINTTG--GQFKMMENITNFQSA-IKAYGVPDIDVFQTVDLWEKKDIAQVVS 390
L PG+V + QF ++NI NF +A + + + D D+F +L++ D +VV+
Sbjct: 67 VLHPGAVVDVGMKPQMSQFMCLKNIRNFLTACTRLFNLADGDLFDANELYDVSDFGKVVN 126
Query: 391 TLFAL 405
TL L
Sbjct: 127 TLSKL 131
>SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/55 (45%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Frame = +1
Query: 217 NKLKPGSVPKINTTGGQ--FKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDI 375
N ++PG + K + G+ FKMMENI F + IK+YGV + +F TVDL+EK+++
Sbjct: 189 NAIQPGVIKKPHLNPGKMGFKMMENIGWFVNFIKSYGVQEEYIFVTVDLYEKRNV 243
>SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8)
Length = 89
Score = 48.8 bits (111), Expect = 5e-06
Identities = 30/83 (36%), Positives = 46/83 (55%)
Frame = +1
Query: 271 KMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRETYRHAEWSGPCL 450
+ MENI NF ++ GV +D+FQTVDL+EK+++A R + P L
Sbjct: 16 RKMENIGNFLLFCESLGVSKVDLFQTVDLYEKQNMAAA------------RAKGLNCPQL 63
Query: 451 GPKPADECKRDFSDEVLKAGQTV 519
GPK A+ R F ++ L+AG+ +
Sbjct: 64 GPKEAEANPRSFDEDKLRAGKGI 86
>SB_36121| Best HMM Match : CH (HMM E-Value=0.0017)
Length = 209
Score = 45.2 bits (102), Expect = 6e-05
Identities = 28/83 (33%), Positives = 42/83 (50%)
Frame = +1
Query: 115 EAQEWIEGVLGAKFPPGELFEDVLKDGTVLCQLINKLKPGSVPKINTTGGQFKMMENITN 294
EA+ WIE F + F + L DG +LC+LI + SV +IN G +N++
Sbjct: 32 EARRWIERATFTPFKNDD-FRESLADGVLLCELIVNVANISVGRINKQGTAHAGRDNLSV 90
Query: 295 FQSAIKAYGVPDIDVFQTVDLWE 363
F A +A G+ +F+ DL E
Sbjct: 91 FFRACEALGLDKYQLFEHEDLDE 113
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +1
Query: 235 SVPKINTTGGQFKMMENITNFQSAIKA--YGVPDIDVFQTVDLWEKKDIAQVVSTLFALG 408
+ P N M ENI NF +A + + D+FQTV L+E++++ QV+S + A
Sbjct: 884 NTPSTNRKSTSLGMQENIANFLNACQEEPFNCNPQDLFQTVYLFERQNLGQVISGIQAFA 943
Query: 409 RETYRH 426
R+ +H
Sbjct: 944 RKVRKH 949
>SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 40.3 bits (90), Expect = 0.002
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +1
Query: 184 LKDGTVLCQLINKLKPGSVPKINTTGG------QFKMMENITNFQSAIKAYGVPDIDVFQ 345
L DG VLC L+N G++P I+ K M+N+ F A K GV +
Sbjct: 336 LADGVVLCHLVNSAYKGTIPSIHIPSAGVPKLTMTKCMKNVDYFLEACKKLGVDRELLCS 395
Query: 346 TVDLWEKKDIAQVVSTLFAL 405
+ D+ ++K +V +T+ AL
Sbjct: 396 SADILQEKSPQRVCATVQAL 415
>SB_53975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 43
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = +1
Query: 82 IASKRNPEKEKEAQEWIEGVLGAKFPPGE-LFEDVLKDGTVL 204
+++K +P + EA +WIE VLG K G+ + EDVLKDG +L
Sbjct: 1 MSAKYDPVMDAEAVDWIEKVLGEKVCQGKSINEDVLKDGQIL 42
>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
Length = 959
Score = 38.7 bits (86), Expect = 0.005
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Frame = +1
Query: 100 PEKEKEAQEWIEGVLGAKFPPGELFEDVLKDGTVLCQLINKLKP---------------G 234
P KE A WI +LG + + F +L G VLC+L N ++ G
Sbjct: 27 PLKEDLAS-WISRLLGEEELNTDTFTSMLDTGVVLCRLANFIQTVGEEFFVRNPKFPRRG 85
Query: 235 SVPKINTT-------GGQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVST 393
P T G F +N++NF + VPD+ +F+T DL K+ V+ T
Sbjct: 86 LFPACGVTYKQRGATHGSFVARDNVSNFIRWCRELRVPDVIMFETEDLVLNKNEKTVLLT 145
Query: 394 LFALGRETYR 423
L + R+ ++
Sbjct: 146 LLEVARKAFK 155
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 35.5 bits (78), Expect = 0.049
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +1
Query: 277 MENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQV 384
M I F +GV D+FQTVDL+EK++I QV
Sbjct: 700 MVTIAKFLDFCGTFGVAKSDLFQTVDLYEKQNIQQV 735
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 67 QVRAKIASKRNPEKEKEAQEWIEGVLG 147
++ K+++K +P + EA +WIE VLG
Sbjct: 671 ELSRKMSAKYDPVMDAEAVDWIEKVLG 697
>SB_47687| Best HMM Match : SCP (HMM E-Value=1.8e-16)
Length = 600
Score = 33.1 bits (72), Expect = 0.26
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +1
Query: 10 SSQHSEKALTQSHNMSLERQVRAKIASKRNPEKEKEAQEWIEGVLGAKFPPGELFEDVLK 189
SSQ +EK L HNMS + + K + + E+EK+ + EG K P E ++ K
Sbjct: 19 SSQQTEKELANGHNMSKGDETKEKPSHRAEKEQEKDNKSSKEG--ETKEPKKEKADNEHK 76
Query: 190 D 192
D
Sbjct: 77 D 77
>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
Length = 820
Score = 32.7 bits (71), Expect = 0.34
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 172 FEDVLKDGTVLCQLINKLKPGSVPKINTTGGQFKMMENITNFQSAIKAYGVP 327
F+ +DG +C+L+N L+PG +P Q+A A+G+P
Sbjct: 449 FDTDWRDGMAICELVNALQPGLIPDSKYKEKTNSEATAKIGIQTAHDAFGIP 500
>SB_15403| Best HMM Match : CH (HMM E-Value=0)
Length = 1907
Score = 32.7 bits (71), Expect = 0.34
Identities = 22/79 (27%), Positives = 41/79 (51%)
Frame = +1
Query: 4 GASSQHSEKALTQSHNMSLERQVRAKIASKRNPEKEKEAQEWIEGVLGAKFPPGELFEDV 183
G +S+ S + SH S E QV + ++++ +++ + A +L+E V
Sbjct: 28 GGTSESSAEGTKHSH--SKEEQVAFADWINSSLKEDESVHKYLP--IDASEDSSDLYEKV 83
Query: 184 LKDGTVLCQLINKLKPGSV 240
KDG +LC++IN PG++
Sbjct: 84 -KDGILLCKMINLSAPGTI 101
>SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 37
Score = 32.3 bits (70), Expect = 0.46
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +1
Query: 442 PCLGPKPADECKRDFSDEVLKAGQTVI 522
P LGPK A+ R+F++E L+AG++++
Sbjct: 10 PTLGPKEAEANVREFTEEQLRAGESIL 36
>SB_56324| Best HMM Match : ASC (HMM E-Value=1.3e-14)
Length = 416
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = -2
Query: 260 PVVLILGTEPGFSLLMSWQRTVPSLRT--SSNSSPGGNLAPRTPSIHSWASFSFSGLRL 90
P V I P + SW T P L + N++PG P ++W F +G RL
Sbjct: 145 PAVTICNNNP---IRKSWAATTPYLPVIMAYNANPGEEAIPINWDAYNWTGFGGAGFRL 200
>SB_58465| Best HMM Match : zf-B_box (HMM E-Value=0.00022)
Length = 476
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +3
Query: 177 GCPQGRHCSLPAHQQAEAWLCPQDQHHRWTVQNDGEHHKLPVCNQSIRCTRHRCVPNRRS 356
G QG C L + +++ + TVQ + EH K+ + ++I + + +
Sbjct: 267 GKHQGHRCDLASRLATNV----REELSKITVQIEEEHEKIVMARRAIEARKEAITQKKEA 322
Query: 357 MGEK-RHRPSSQHTV 398
+G+K H+ S TV
Sbjct: 323 LGQKIAHQASGIRTV 337
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/44 (22%), Positives = 21/44 (47%)
Frame = -2
Query: 641 LKINITLCWCCVHLPIKILRPAPRFCPD*VAPLLDPACRPITVC 510
+++ + +C+ CVHL +++ P C + P C + C
Sbjct: 1039 VRVCLPVCFSCVHLSVRVCLPVCFSCVHLSVRVCSPVCSRVFTC 1082
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/55 (23%), Positives = 21/55 (38%)
Frame = -2
Query: 674 VHYHTNLYKIILKINITLCWCCVHLPIKILRPAPRFCPD*VAPLLDPACRPITVC 510
VH + + T + CVHL +++ P C +L P C + C
Sbjct: 1102 VHLSVRVLSPVCSRVFTCLYACVHLSVRVCLPVCFSCVHLSVRVLSPVCPRVFTC 1156
>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 448 LGPKPADECKRDFSDEVLKAGQTVIG 525
LGP P+D+ RDF L++GQ V G
Sbjct: 233 LGPDPSDKKVRDFIWNTLQSGQVVPG 258
>SB_52622| Best HMM Match : Ank (HMM E-Value=1.2e-05)
Length = 402
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 22 SEKALTQSHNMSLERQVRAKIASKRNPEKEKEAQEWI 132
+ +A T+ N + Q R KIA +R + E+E QE+I
Sbjct: 250 ANRAKTEDKNRQSDFQEREKIARERTRQLEQEHQEYI 286
>SB_54206| Best HMM Match : SET (HMM E-Value=0.029)
Length = 160
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 264 TVQNDGEHHKLPVCNQSIRCTRHRCVPNRRSMGEKRH 374
TVQ D E H LP N S T H C PN + + R+
Sbjct: 44 TVQVDKEKHILPASNLSY--TNHSCDPNAEFVFKPRN 78
>SB_28876| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 356
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -2
Query: 440 PLHSACL*VSRPRANSVLTTWAMSFFSHRSTVWNTSMSGTPYALIADW 297
PLH+ L SR R + TW ++FF+ ++ ++ + DW
Sbjct: 134 PLHAGTLITSRRRYFLIAATWVIAFFNASPLLYTMTLDNNNLCQL-DW 180
>SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)
Length = 2532
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 127 WIEGVLGAKF--PPGELFEDVLKDGTVLCQLINKLKPGSVP 243
++ G +G K+ PP FE +L+ T +I L PGS P
Sbjct: 1904 FVTGRMGEKYVTPPVLSFESILEQSTPFSPIIFILSPGSDP 1944
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Frame = +3
Query: 180 CPQGRHCSLPAHQQA--EAWLCPQDQHHRWTVQNDGEHHKLPVCNQSIRCT 326
CP G +C H + W CP+ H W G + + +CT
Sbjct: 917 CPAGHYCIDGKHPEPCPAGWYCPEGTGHDWQPCPRGTYSPAQYLSHLGQCT 967
>SB_29928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 133 EGVLGAKFPPGELFEDVLKDGTVLCQLINKLKPGSVPKINTTG 261
+G LGA F P +LF + + + ++N G V + TG
Sbjct: 73 QGSLGANFDPSKLFYGYMANLNIWANVLNDFNRGKVYEQGCTG 115
>SB_47464| Best HMM Match : RVT_1 (HMM E-Value=0.012)
Length = 558
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 401 PSVVRLTDTRNGAAPASDPSPLTNANVTFLMKS*RPGK 514
PS +R+ D + P + P+T V + S +PGK
Sbjct: 20 PSTIRILDVCSNTTPCRELRPVTEGQVLKELHSLKPGK 57
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 401 PSVVRLTDTRNGAAPASDPSPLTNANVTFLMKS*RPGK 514
PS +R+ D + P + P+T V + S +PGK
Sbjct: 467 PSTIRILDVCSNTTPCRELRPVTEGQVLKELHSLKPGK 504
>SB_42674| Best HMM Match : DUF26 (HMM E-Value=1)
Length = 493
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +1
Query: 142 LGAKFPPGELFEDV--LKDGTVLCQLINKLKPGSVPKINTTGGQFKMMENITNFQSAIKA 315
L A PP DV L GT L LKP PK+ G + + +I F S++ A
Sbjct: 89 LMATLPPTSTAHDVERLSTGTKFA-LRQWLKPIVAPKVCNNTGLHRPVAHIPPFTSSVAA 147
Query: 316 YGVPDIDVFQTVDLWEKKDIAQVVST 393
G I + W D ++++ +
Sbjct: 148 QGKAPIKSVSALS-WPGTDQSEIMDS 172
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,029,382
Number of Sequences: 59808
Number of extensions: 613019
Number of successful extensions: 1732
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1720
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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