Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30640
(384 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.33
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 27 1.3
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 1.3
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma... 25 3.1
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 5.4
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 25 5.4
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 25 5.4
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo... 24 7.1
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 24 7.1
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 24 9.4
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 24 9.4
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 24 9.4
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 0.33
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Frame = +1
Query: 130 LPVNSSAADVTAELTSDGYLVVTAPISEYVDKTKNTERVVPI--VETGAPYKKDEPV*KT 303
LP S++ + + + G ++ PI+ V T + +PI T + P+ T
Sbjct: 222 LPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPL-PT 280
Query: 304 TVETLDVSTTQEP--KTSTPAVVTASP 378
T + ST+ P ++TP T P
Sbjct: 281 TSTSCTTSTSIPPTGNSTTPVTPTVPP 307
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 26.6 bits (56), Expect = 1.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 268 APYKKDEPV*KTTVETLDVSTTQEPKTSTPAVVTAS 375
+P P+ +T TLD S P S PAV++ S
Sbjct: 273 SPQPYSGPILASTAPTLDGSYLSNPSNSNPAVMSLS 308
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 1.3
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -2
Query: 293 TGSSFLYGAPVSTIGTTRSVFFVLSTYSLIGAVTTRYPSEVSSAVTSAAL 144
+ SS P + TT S+ + +T + V TRY + S+ VTS+++
Sbjct: 442 SSSSASLAVPTVSSSTTGSLHYKTTTTVWVTEVFTRYLGDDSTPVTSSSI 491
>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 25.4 bits (53), Expect = 3.1
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2
Query: 263 VSTIGTTRSVFFVLSTYSLIGAVTTRYPSEVSSAVTSAALEFTGRL*VWK 114
+ T GT VFF YSLIG R+ +S + + A +F WK
Sbjct: 307 LQTAGTILCVFF---PYSLIGHKELRFVYPISPILLTLAGKFFSSFSSWK 353
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 24.6 bits (51), Expect = 5.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 63 PWTKIKSPFTLTLRLCF 13
PWTK+ SP + +R F
Sbjct: 250 PWTKVDSPHVIKIREAF 266
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 24.6 bits (51), Expect = 5.4
Identities = 9/42 (21%), Positives = 21/42 (50%)
Frame = +1
Query: 154 DVTAELTSDGYLVVTAPISEYVDKTKNTERVVPIVETGAPYK 279
D+ +L ++ L ++AP + +T +V+ + PY+
Sbjct: 111 DIKKDLATESQLPLSAPFKDESTRTMTDPQVLAYIHQSMPYQ 152
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 24.6 bits (51), Expect = 5.4
Identities = 9/42 (21%), Positives = 21/42 (50%)
Frame = +1
Query: 154 DVTAELTSDGYLVVTAPISEYVDKTKNTERVVPIVETGAPYK 279
D+ +L ++ L ++AP + +T +V+ + PY+
Sbjct: 111 DIKKDLATESQLPLSAPFKDESTRTMTDPQVLAYIHQSMPYQ 152
>SPAC22F3.12c |rgs1||regulator of G-protein signaling
Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 24.2 bits (50), Expect = 7.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 220 DKTKNTERVVPIVETGAPYKKD 285
DK + R++ I G PY KD
Sbjct: 30 DKRQQCSRLMKITSNGRPYSKD 51
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 24.2 bits (50), Expect = 7.1
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +1
Query: 115 FHTYSLPVNSSAADVTAELTSDGYLVVTAPISEYVDKTKNTERVVPIVETGAPYKKDEPV 294
F+T++L + +V L SDG+ PI + +T + + V+ +VE DE V
Sbjct: 722 FNTFNLNIGPIRLNVYKHLNSDGH----QPIRYMMRETDDEDAVMFVVEFDLLEDDDETV 777
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 23.8 bits (49), Expect = 9.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 187 LVVTAPISEYVDKTKNTERVVPIVET 264
L V+AP S VDK R +P+ T
Sbjct: 537 LAVSAPGSHIVDKAWKATRALPLYRT 562
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 23.8 bits (49), Expect = 9.4
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = -1
Query: 246 NALCIFRFINIFADRRRHDEVSIGSQLSRNISS 148
+A+ RF+ F ++ ++VS LS+N+++
Sbjct: 320 SAIAALRFLESFPEKLPSEKVSFMESLSKNLTT 352
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 23.8 bits (49), Expect = 9.4
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +1
Query: 166 ELTSDGYLVVTAPISEYVDKTKNTERVVPIVE 261
E+ DGY + Y D T N V+ + E
Sbjct: 412 EVEHDGYCITVFSAPNYCDSTGNLGAVIKVKE 443
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,329,793
Number of Sequences: 5004
Number of extensions: 23171
Number of successful extensions: 70
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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