Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30640
(384 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572... 29 0.95
03_02_0091 + 5574528-5577254 29 1.7
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804 27 3.8
04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506... 27 3.8
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850 27 5.1
12_02_0719 + 22500217-22500395,22500506-22500551,22500671-225007... 27 6.7
03_03_0216 + 15495395-15495566,15495648-15495733,15495824-154958... 27 6.7
12_01_1111 + 11842837-11843094,11843142-11843255,11843267-118442... 26 8.9
06_02_0305 + 14111798-14111843,14112645-14113111,14113299-14113667 26 8.9
01_06_0827 + 32260313-32260525,32261862-32262716 26 8.9
01_06_0404 + 29098141-29098214,29098459-29098673,29099491-290995... 26 8.9
>04_04_0201 -
23555336-23556008,23556097-23556258,23556353-23557206,
23557452-23557613,23558197-23558649,23559729-23559788,
23559983-23560058,23561546-23561593,23561948-23562022,
23562067-23562494
Length = 996
Score = 29.5 bits (63), Expect = 0.95
Identities = 23/81 (28%), Positives = 38/81 (46%)
Frame = +1
Query: 121 TYSLPVNSSAADVTAELTSDGYLVVTAPISEYVDKTKNTERVVPIVETGAPYKKDEPV*K 300
T S+ V+ AA + +G + VT+ +S+ VD+ V+P+ A + DE K
Sbjct: 659 TASMQVHEGAAAAQLGESPEG-VDVTSAVSDEVDRDDKATHVLPLAAAAADGESDELERK 717
Query: 301 TTVETLDVSTTQEPKTSTPAV 363
LD T + T++ AV
Sbjct: 718 R--RKLDSCATMDMSTASRAV 736
>03_02_0091 + 5574528-5577254
Length = 908
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 180 WIPRRDGADQRIC**NEKYRARCTYC 257
W+ R DGA++R+ +Y+ RC C
Sbjct: 70 WLSRVDGAEKRVAKLRREYQRRCCSC 95
>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
Length = 1209
Score = 27.5 bits (58), Expect = 3.8
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Frame = -3
Query: 382 VPVMQSLPLELMSSAPES*K----RPRFLLSSFIQARPS-CTERQSR 257
V V+QS+P + SS+P S K P F+ SS ++R S C ++ R
Sbjct: 256 VVVLQSVPTQQQSSSPSSSKLRADAPEFIPSSIKKSRASRCKAKKKR 302
>04_04_0964 -
29749624-29749649,29749742-29749945,29750036-29750634,
29750742-29750826,29750914-29751562,29751568-29751643,
29753891-29753957,29754097-29754998,29756579-29756790
Length = 939
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 91 HDVFASQFFHTYSLPVNSSAADVTAELTSD 180
HD F + H S+P+ A V AE++ D
Sbjct: 809 HDSFLRSYLHLTSMPLPCEGAAVPAEISKD 838
>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
Length = 1173
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 115 RTGWRTRHGRLALASCDTLDEDKVSLYFNFK 23
R GW R +C T+ E+ V+L++ FK
Sbjct: 1084 RRGWDASFCRRGGLNCTTIGEEPVNLFYMFK 1114
>12_02_0719 +
22500217-22500395,22500506-22500551,22500671-22500745,
22500846-22500932,22501077-22501148,22501267-22501338,
22501448-22501519,22501644-22502510
Length = 489
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +1
Query: 196 TAPISEYVDKTKNTERVVPIVETGAPYKKDEPV*KTTVETLDVSTTQEPKTSTPA 360
T P+ + K + P+ ET +E T ETL V +E T++ A
Sbjct: 274 TTPMVQTEVKLEEETETTPVAETTEVKPAEETETSTVAETLQVKPAEETDTTSMA 328
>03_03_0216 +
15495395-15495566,15495648-15495733,15495824-15495874,
15496005-15496390,15496760-15496898,15497540-15497595,
15497712-15497782,15497876-15498081
Length = 388
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 264 WRSVQEGRACIKDDSRNLGRFYDSGAEDINSSGSDCITG 380
WR + +A D LG+ Y +E++++S SDC +G
Sbjct: 2 WRFLGASKALTSSDVWFLGKCYKLSSEELSNS-SDCESG 39
>12_01_1111 +
11842837-11843094,11843142-11843255,11843267-11844247,
11861747-11862025,11862998-11863098,11863723-11863792,
11863947-11863974,11864057-11864114,11864440-11864536
Length = 661
Score = 26.2 bits (55), Expect = 8.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -3
Query: 382 VPVMQSLPLELMSSAPES*K----RPRFLLSSFIQARPSCTERQSRQ*VQ 245
V V+QS+P + SS+P S K P F+ SS ++R S + ++ +Q
Sbjct: 241 VVVLQSVPTQQQSSSPSSSKLRADAPEFIPSSIKKSRASRRRAKKKRTLQ 290
>06_02_0305 + 14111798-14111843,14112645-14113111,14113299-14113667
Length = 293
Score = 26.2 bits (55), Expect = 8.9
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Frame = +1
Query: 184 YLVVTAPISEYVDKTKNTERVV--PIVE-TGAPYKKDEPV*KTTV----ETLDVSTTQEP 342
YL +TA S ++ KT + +V+ I+E T DEP + +V E L V + EP
Sbjct: 22 YLDITAGGS-FMHKTPSEGKVILDRIIENTSFMTPCDEPPLEASVSKIEEPLTVESHPEP 80
Query: 343 KTSTPAVVTASPEP 384
TST + PEP
Sbjct: 81 STSTDSTDEEVPEP 94
>01_06_0827 + 32260313-32260525,32261862-32262716
Length = 355
Score = 26.2 bits (55), Expect = 8.9
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 127 SLPVNSSAADVTAELTSDGYLVVTAPISEYVDKTKNTERVVPIVETGAP 273
S+ S+A T +TSD V +A ++ +KN +VE AP
Sbjct: 243 SVAAASAATVATGAVTSDSCSVPSAEVNGAAFSSKNNPEPATVVEKKAP 291
>01_06_0404 +
29098141-29098214,29098459-29098673,29099491-29099596,
29099686-29100235,29100332-29100429,29100519-29100764,
29100867-29100981,29101092-29101305,29101402-29101991
Length = 735
Score = 26.2 bits (55), Expect = 8.9
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -2
Query: 263 VSTIGTTRSVFFVLSTYSLIGAVTTRYPSEVSSAVTSAALEFTGRL 126
V +G + V T +L G T YP E+S EFT RL
Sbjct: 647 VKNVGAAPCRYAVSVTEALAGVKVTVYPPELSFESYGEEREFTVRL 692
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,776,941
Number of Sequences: 37544
Number of extensions: 154025
Number of successful extensions: 498
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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