Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30640
         (384 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide famil...    30   0.61 
At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide famil...    30   0.61 
At2g04900.1 68415.m00509 expressed protein                             29   1.1  
At3g49800.1 68416.m05445 BSD domain-containing protein contains ...    29   1.4  
At3g07090.1 68416.m00843 expressed protein                             28   2.5  
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea...    28   2.5  
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea...    28   2.5  
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta...    27   4.3  
At4g15290.1 68417.m02341 cellulose synthase family protein simil...    27   4.3  
At5g30341.1 68418.m03656 hypothetical protein                          27   5.7  
At4g26330.1 68417.m03786 subtilase family protein contains simil...    26   9.9  

>At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide family
           protein contains Pfam profile: PF05558 DREPP plasma
           membrane polypeptide
          Length = 225

 Score = 29.9 bits (64), Expect = 0.61
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
 Frame = +1

Query: 97  VFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTA-PISEYVDKTKNTERV-VPIVETGA 270
           VF  +   T  +PV    A+  A+         T+    E V++TK  E     +VE   
Sbjct: 128 VFLPEEVKTKEIPVEEVKAEEPAKTEEPAKTEGTSGEKEEIVEETKKGETPETAVVEEKK 187

Query: 271 PYKKDEPV*KTTVETLDVSTTQEPKTSTPAVVTASPEP 384
           P  +++    T    +  +  +EP+T+T A V   P+P
Sbjct: 188 PEVEEKKEEATPAPAVVETPVKEPETTTTAPVAEPPKP 225


>At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide family
           protein contains Pfam profile: PF05558 DREPP plasma
           membrane polypeptide
          Length = 225

 Score = 29.9 bits (64), Expect = 0.61
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
 Frame = +1

Query: 97  VFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTA-PISEYVDKTKNTERV-VPIVETGA 270
           VF  +   T  +PV    A+  A+         T+    E V++TK  E     +VE   
Sbjct: 128 VFLPEEVKTKEIPVEEVKAEEPAKTEEPAKTEGTSGEKEEIVEETKKGETPETAVVEEKK 187

Query: 271 PYKKDEPV*KTTVETLDVSTTQEPKTSTPAVVTASPEP 384
           P  +++    T    +  +  +EP+T+T A V   P+P
Sbjct: 188 PEVEEKKEEATPAPAVVETPVKEPETTTTAPVAEPPKP 225


>At2g04900.1 68415.m00509 expressed protein
          Length = 128

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -2

Query: 245 TRSVFFVLSTYSLIGAVTTRYPSEVSSAVTSAALEFTG 132
           T S++ ++ T +L+ A +T+YP+     +T+  + F+G
Sbjct: 58  TASLYHLVHTAALVSAPSTKYPNIFGGLLTAGIVAFSG 95


>At3g49800.1 68416.m05445 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 428

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
 Frame = +1

Query: 91  HDVFASQFFHTYSLP-VNSSAADVTAELTSDGYLVVTAPISEYVDKTKNTERVVPIVETG 267
           H +F+     T S P V  S A ++ EL        T  + E  D+  ++E V P+ +  
Sbjct: 244 HPIFSKHDALTLSTPQVLESRALLSHELLRKRNKD-TVVVPESSDRGADSENVEPLFQPT 302

Query: 268 APYKKDEP--V*KTTVETLDVSTTQEPKTSTPAVVT 369
            P  K EP  V   TVET+  +   E +T    V T
Sbjct: 303 NPSPKSEPEPVKTITVETIHSAERSEFETEKHTVET 338


>At3g07090.1 68416.m00843 expressed protein
          Length = 265

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 178 DGYLVVTAPISEYVDKTKNTERVVPIVETGAPYK--KDEPV 294
           DG  +V AP  E  + +  TE+V P+++  A  +  KD+P+
Sbjct: 177 DGPQIVIAPKLEAAETSTATEKVPPVIQPSASKEKVKDDPL 217


>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to neural cell adhesion molecule 2, large
           isoform precursor gb|M76710 from Xenopus laevis, and
           beta transducin from S. cerevisiae gb|Q05946. ESTs
           gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
           gb|H36304, and gb|N65606 come from
          Length = 793

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 197 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 111
           V  R PSE++S++ +A L  T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564


>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to neural cell adhesion molecule 2, large
           isoform precursor gb|M76710 from Xenopus laevis, and
           beta transducin from S. cerevisiae gb|Q05946. ESTs
           gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
           gb|H36304, and gb|N65606 come from
          Length = 790

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 197 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 111
           V  R PSE++S++ +A L  T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564


>At4g28470.1 68417.m04073 26S proteasome regulatory subunit, putative
            contains Pfam domain PF01851: Proteasome/cyclosome repeat
          Length = 1103

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 115  FHTYSLPVNSSAADVTAELTSDGYLVVTAPISEYVDKTK 231
            F T+S PV  +A +  AEL ++ Y+V   P+  Y  + K
Sbjct: 950  FQTHSTPVLLAAGE-RAELATEKYVVPLIPLLHYPTRNK 987


>At4g15290.1 68417.m02341 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -4
           [gi:9622880]
          Length = 757

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +3

Query: 312 NLGRFYDSGAEDINSS 359
           NLG  YDS AEDIN+S
Sbjct: 449 NLGWMYDSVAEDINTS 464


>At5g30341.1 68418.m03656 hypothetical protein
          Length = 153

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 118 GRTGWRTRHGRLALASCDTLDEDKVSLYFNF 26
           GR GW T   RL L  CD +    V + + F
Sbjct: 39  GRVGWLTEWSRLLLGLCDRVSVSVVRMDWFF 69


>At4g26330.1 68417.m03786 subtilase family protein contains
           similarity to SBT1, a subtilase from tomato plants
           GI:1771160 from [Lycopersicon esculentum]
          Length = 746

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -2

Query: 176 EVSSAVTSAALEFTGRL*VWKNW---LANTSWSSCFS 75
           E++  +  A   F G +  W+NW   LAN +   CFS
Sbjct: 345 EITGTLALATTYFNGGVCKWENWMKKLANETIILCFS 381


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,970,396
Number of Sequences: 28952
Number of extensions: 120066
Number of successful extensions: 386
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)