Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30638
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    30   0.33 
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S...    27   2.3  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    27   2.3  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    27   4.0  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   9.3  

>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 196  NIFYQLYFVTFIDYLRDKQTFNCVYPKIYNIINNISN 306
            +I Y+L F    +Y  + Q F C++P +Y++  NI+N
Sbjct: 961  SILYKLRFAIEQNYF-EPQMFACIFPLLYDLTFNITN 996


>SPBC1773.03c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 572 GHGHMRVLSISFKKKEQICYI 510
           GHG+  V+    K+ E++CYI
Sbjct: 60  GHGNKEVIDAMHKQSEKVCYI 80


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 663 INVIVHRWRKWRINFFIRISNQIQLFVTVTWTWTYEG 553
           +N++ H+ +K    + IR   + +LF+T TW W   G
Sbjct: 319 LNIVFHKHKKVCTYYMIRHYAKRRLFITPTW-WLRSG 354


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 250 QTFNCVYPKIYNIINNISNLENYI*IHKRTHYVHNSIEIVMKLIRL 387
           QTF+ VYPK++   N+ S +E+++         HN +E+   L +L
Sbjct: 69  QTFSQVYPKLFIGENDRSLVESWVETASALAGNHNFLELSSLLAQL 114


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 351  MHIMSPFMYLNIIFKIRNVINYIIYFWIYTIKCLFIS*IVY 229
            ++  S  MY+ +   I   + + IYFWI T+  L IS  +Y
Sbjct: 1328 LYFGSRLMYMLLFGSITAWLPHYIYFWI-TLTALCISPFLY 1367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,889,248
Number of Sequences: 5004
Number of extensions: 57214
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)