Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30638
         (785 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37752| Best HMM Match : MFS_1 (HMM E-Value=0.11)                    30   1.8  
SB_18704| Best HMM Match : MFS_1 (HMM E-Value=0.034)                   29   3.2  
SB_50002| Best HMM Match : Carn_acyltransf (HMM E-Value=6.5e-05)       28   9.9  
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)           28   9.9  

>SB_37752| Best HMM Match : MFS_1 (HMM E-Value=0.11)
          Length = 302

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -3

Query: 663 INVIVHRWRKWRINFFIRISNQIQLFVTVTWTWTYEGPEYII*KKRANMLHHSL 502
           I ++ +  R WR   F+ I     L + + W W +E P ++I K R +  H  L
Sbjct: 157 IILVAYFIRDWRT--FMLIGAAPGLAILLFWKWIFESPRWLITKGRLDEAHEIL 208


>SB_18704| Best HMM Match : MFS_1 (HMM E-Value=0.034)
          Length = 363

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -3

Query: 663 INVIVHRWRKWRINFFIRISNQIQLFVTVTWTWTYEGPEYII*KKRANMLHHSL 502
           I ++ +  R WR   F+ I     L + + W W +E P +++ K R +  H  L
Sbjct: 251 IILVAYFIRDWRT--FMLIGAAPGLAILLFWKWIFESPRWLLTKGRLDEAHEIL 302


>SB_50002| Best HMM Match : Carn_acyltransf (HMM E-Value=6.5e-05)
          Length = 326

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 166 YFICDLLCDNNIFYQLYFVTFIDYLRDKQTFNCVYPK 276
           Y +CD+L DN+  Y  +      YLR  Q  N  Y K
Sbjct: 167 YSVCDILGDNDTRYATFSAITTLYLRYSQYKNTRYAK 203


>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
          Length = 3015

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 651 VHRWRKWRINFFIRISNQIQLFVTVTWTWT 562
           +  W+ WR+   +++S  ++L V  T  WT
Sbjct: 279 IFEWKVWRVLDGLKLSENVELVVVGTAQWT 308


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,105,297
Number of Sequences: 59808
Number of extensions: 379061
Number of successful extensions: 608
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)