Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30638
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92785-1|CAB07199.2|  299|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z83129-5|CAB05643.1|  349|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AJ276028-1|CAC81655.1|  816|Caenorhabditis elegans TRP homlogous...    29   2.9  
AF040654-5|AAN65302.2|  816|Caenorhabditis elegans Trp (transien...    29   2.9  
AF040654-4|AAN65303.2|  886|Caenorhabditis elegans Trp (transien...    29   2.9  
U80445-7|AAB37798.1|  368|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U80437-6|AAB37621.1|  368|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AF003386-10|AAB54251.1|  189|Caenorhabditis elegans Hypothetical...    28   8.7  

>Z92785-1|CAB07199.2|  299|Caenorhabditis elegans Hypothetical
           protein F31E9.2 protein.
          Length = 299

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +1

Query: 211 LYFVTFIDYLRDKQTFNCVYPKIYNIINNISNLENYI 321
           LY +TF+  LR ++TF+  + ++Y + + I NL  YI
Sbjct: 21  LYILTFVVILRHRKTFDSSFFQLY-VFDGIMNLFTYI 56


>Z83129-5|CAB05643.1|  349|Caenorhabditis elegans Hypothetical
           protein W06G6.8 protein.
          Length = 349

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 345 IMSPFMYLNIIFKIRNVINYIIYFWIYTIKCL 250
           IM+    L+++  +  V+ ++ YFWIY   C+
Sbjct: 51  IMTGIAILDLVVLLEVVLEHVYYFWIYDNPCI 82


>AJ276028-1|CAC81655.1|  816|Caenorhabditis elegans TRP homlogous
           cation channel proteinprotein.
          Length = 816

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 419 FFLEYDLVVTAHACDARHLRTYSCVLTRNE*CNIF 523
           FF+ Y LV+ A AC    L  Y   + +NE CN++
Sbjct: 546 FFMVYALVLFAFACGLNQLLWYYASMRQNE-CNLY 579


>AF040654-5|AAN65302.2|  816|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 2, isoform a
           protein.
          Length = 816

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 419 FFLEYDLVVTAHACDARHLRTYSCVLTRNE*CNIF 523
           FF+ Y LV+ A AC    L  Y   + +NE CN++
Sbjct: 546 FFMVYALVLFAFACGLNQLLWYYASMRQNE-CNLY 579


>AF040654-4|AAN65303.2|  886|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 2, isoform b
           protein.
          Length = 886

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 419 FFLEYDLVVTAHACDARHLRTYSCVLTRNE*CNIF 523
           FF+ Y LV+ A AC    L  Y   + +NE CN++
Sbjct: 546 FFMVYALVLFAFACGLNQLLWYYASMRQNE-CNLY 579


>U80445-7|AAB37798.1|  368|Caenorhabditis elegans Hypothetical
           protein C50F2.5 protein.
          Length = 368

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 23/86 (26%), Positives = 40/86 (46%)
 Frame = +1

Query: 457 VRRSSPTYVLVRTHTQRVM*HICSFFLNDILRTLICPCPCHCYE*LNLI*DTNKKVYSPF 636
           VR     Y++V+  T++    I    L D +R L+  C CH  +   +    + K Y+ F
Sbjct: 103 VRMEGAEYIIVQAPTKKSSKLIWRVILKDHIRILV--CLCHDEQ---MSGSDDGKCYTYF 157

Query: 637 PPPVYNYINTRLSIKLDKGSLKIIIK 714
           P      +  ++  +L KG+L I+ K
Sbjct: 158 P----TELEQKMEAELMKGTLSIVCK 179


>U80437-6|AAB37621.1|  368|Caenorhabditis elegans Hypothetical
           protein C43E11.5 protein.
          Length = 368

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 23/86 (26%), Positives = 40/86 (46%)
 Frame = +1

Query: 457 VRRSSPTYVLVRTHTQRVM*HICSFFLNDILRTLICPCPCHCYE*LNLI*DTNKKVYSPF 636
           VR     Y++V+  T++    I    L D +R L+  C CH  +   +    + K Y+ F
Sbjct: 103 VRMEGAEYIIVQAPTKKSSKLIWRVILKDHIRILV--CLCHDEQ---MSGSDDGKCYTYF 157

Query: 637 PPPVYNYINTRLSIKLDKGSLKIIIK 714
           P      +  ++  +L KG+L I+ K
Sbjct: 158 P----TELEQKMEAELMKGTLSIVCK 179


>AF003386-10|AAB54251.1|  189|Caenorhabditis elegans Hypothetical
           protein F59E12.10 protein.
          Length = 189

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 229 IDYLRDKQTFNCVYPKIYNIINNISN 306
           ID+ R   TFNC+  K+  ++NN  N
Sbjct: 19  IDHHRTAVTFNCLIMKMTEMLNNFGN 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,666,183
Number of Sequences: 27780
Number of extensions: 313190
Number of successful extensions: 626
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)