Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30637
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo... 191 9e-50
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 170 1e-43
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 29 0.48
SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit... 28 1.5
SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.0
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 27 2.6
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 26 4.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 4.5
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-... 26 6.0
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 7.9
>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 385
Score = 191 bits (465), Expect = 9e-50
Identities = 97/175 (55%), Positives = 125/175 (71%), Gaps = 7/175 (4%)
Frame = +1
Query: 112 QPKNKVCI--VGSGNWGSAIAKIVGRNA-ASLSNFEDRVTMWVYEEIIEGK----KLTEI 270
+PK ++ I VGSGNWG+AIAKI G NA A +F +V MWV+EE IE K KLTE+
Sbjct: 18 RPKKRLSIGVVGSGNWGTAIAKICGENARAHGHHFRSKVRMWVFEEEIEYKGEKRKLTEV 77
Query: 271 INETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTA 450
NE HENVKYLPG + P NV+AVPDV E A+ AD+L+FVVPHQF+ +C ++G I+P A
Sbjct: 78 FNEAHENVKYLPGIECPPNVIAVPDVREVARRADILVFVVPHQFIERVCDQMVGLIRPGA 137
Query: 451 AALSLIKGFDIAEGGGIDLISHIITRCLKIPCAVLMGANIASEVAEEKFCETTIG 615
+S IKG +++ G+ L S +I+ L I C VL GAN+A+EVA E+FCETTIG
Sbjct: 138 VGISCIKGVAVSK-EGVRLYSEVISEKLGIYCGVLSGANVANEVAREQFCETTIG 191
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 170 bits (414), Expect = 1e-43
Identities = 92/168 (54%), Positives = 115/168 (68%), Gaps = 5/168 (2%)
Frame = +1
Query: 127 VCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEII--EGKK--LTEIINETHEN 291
V I+GSGNWG+AIAKI G NA + + F +V MW+YEE I EGK+ LTE+ N THEN
Sbjct: 27 VGIIGSGNWGTAIAKICGENAKAHPDIFHPQVHMWMYEEKIQHEGKECNLTEVFNTTHEN 86
Query: 292 VKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIK 471
VKYL G K PSNV A PD+ + +D+L++V+PHQFV IC+ L G +K A A+S IK
Sbjct: 87 VKYLKGIKCPSNVFANPDIRDVGSRSDILVWVLPHQFVVRICNQLKGCLKKDAVAISCIK 146
Query: 472 GFDIAEGGGIDLISHIITRCLKIPCAVLMGANIASEVAEEKFCETTIG 615
G + + + L S II + C VL GANIASEVA+EKFCETTIG
Sbjct: 147 GVSVTK-DRVRLFSDIIEENTGMYCGVLSGANIASEVAQEKFCETTIG 193
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 29.5 bits (63), Expect = 0.48
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +1
Query: 499 IDLISHIITRCLKIPCAVLMGANIASEVAEEKFCET----TIGCRDVMLAPLMRDII 657
+D+ + ++T C+ P +VL+ AS +A K C IG R LA +R I
Sbjct: 152 LDIAAEVVTACINAPDSVLVDILAASIIAGAKACMREVIGRIGLRSECLASALRRAI 208
>SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit
7a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = -2
Query: 552 YSTGNF*ASCNNM*YKIDATTFGYIKSLNQ--RQSS---CSWLYFSKQSRADSSD 403
YS F C+N+ +++DA T KS + R SS ++ F K+ R D +D
Sbjct: 148 YSLDRFIERCSNILFQLDAGTPSVSKSFKRASRMSSSDGIDYMVFDKRPRPDDTD 202
>SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 75
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 302 RYLTFS*VSLIISVNFFPSIISSYTHIVTLSSK 204
RY TFS + L+ N FP ISS+ ++T K
Sbjct: 26 RYATFSILKLV-EYNCFPGFISSFHSLLTYRKK 57
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 397 QFVRTICSTLLGKIKPTAAALSLIKGFDIAE 489
+ +R IC T+ G ++ + + L KGF++ E
Sbjct: 315 ELIRFICLTINGNLQISGQTVDLEKGFEVIE 345
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 266 SVNFFPSIISSYTHIVTLSSKFDR 195
+++ PSIISSYT + L++K R
Sbjct: 206 TISALPSIISSYTSLAPLNTKLYR 229
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 229 VYEEIIEGKKLTEIINETHENVKYL 303
+ ++ + +K E++NETHE K+L
Sbjct: 969 IQQKYLASEKTLEMMNETHEQFKHL 993
>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
oxidoreductase/ARE-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 6.0
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Frame = +1
Query: 298 YLPGHKLPSNVVAVPDVVEA-AKDADLLIFVVPH----QFVR---TICSTLLGKIKPTAA 453
Y+PG + V AV D VEA K D ++++ P Q+ T+ S + KI A
Sbjct: 59 YIPGKEAAGVVAAVGDKVEADFKVGDRVVYLTPFGAYAQYTNVPTTLVSKVSEKIPLKIA 118
Query: 454 ALSLIKG 474
+ +L++G
Sbjct: 119 SAALLQG 125
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -3
Query: 662 VCMISRINGASITSRQPMVVSQNFSSATSDAILAPI 555
V S++ S TS+ +VS+N SATS +I PI
Sbjct: 175 VSSASKVASISNTSKPNPIVSENPISATSVSIEIPI 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,367
Number of Sequences: 5004
Number of extensions: 53949
Number of successful extensions: 179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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