Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30637
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0)             136   1e-32
SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.)             124   5e-29
SB_5360| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.90 
SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_6904| Best HMM Match : NifT (HMM E-Value=8.7)                       29   3.6  
SB_38574| Best HMM Match : WW (HMM E-Value=4.9)                        28   8.4  
SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  

>SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0)
          Length = 358

 Score =  136 bits (330), Expect = 1e-32
 Identities = 79/171 (46%), Positives = 105/171 (61%), Gaps = 2/171 (1%)
 Frame = +1

Query: 109 KQPKNKVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEGKKLTEIINETH 285
           ++ + +V I+GSGNWGS IA+IVG+N    ++ F + V M+ YEE+++G KLTEIIN  H
Sbjct: 3   EEGRKRVAIIGSGNWGSVIARIVGQNVKEHNDVFFEGVEMYTYEELVDGVKLTEIINTKH 62

Query: 286 ENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSL 465
            NVKYLP   +P N+ A PDVVE  KDAD+L+FVVPHQ                      
Sbjct: 63  MNVKYLPDFLIPENIHANPDVVECVKDADILVFVVPHQ---------------------- 100

Query: 466 IKGFDIAEGGGIDLISHIITRCLKIP-CAVLMGANIASEVAEEKFCETTIG 615
             G D  +  G+ L+S++I   L +P  +VLMGAN+A EVA E F E TIG
Sbjct: 101 --GLDHTK-TGLTLVSNVIKEALDLPEVSVLMGANLAKEVARELFGEATIG 148


>SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score =  124 bits (300), Expect = 5e-29
 Identities = 75/187 (40%), Positives = 109/187 (58%), Gaps = 2/187 (1%)
 Frame = +1

Query: 124 KVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEGKKLTEIINETHENVKY 300
           KV ++GSGNWG+AIA+I+G N     + F ++V M+VY+ +I G+KL+EIIN  HENVK 
Sbjct: 229 KVTVLGSGNWGTAIARIIGDNVRKKPHLFHNKVQMYVYDSLINGRKLSEIINTEHENVKD 288

Query: 301 LPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFD 480
           LPG K+P NV                       F+ ++C  +   IKP   A+SLIKG D
Sbjct: 289 LPGFKIPPNV-----------------------FLDSVCQKIKSSIKPDVLAISLIKGLD 325

Query: 481 IAEGGGIDLISHIITRCLKIP-CAVLMGANIASEVAEEKFCETTIGCRDVMLAPLMRDII 657
             +  G+ L+S+ I   L +   +V+MGAN+A EVA+  F ETTIG R      + ++++
Sbjct: 326 HRK-KGLHLVSNQIKESLGLQHVSVMMGANLADEVAKGFFSETTIGSRLEEHGYIFKELL 384

Query: 658 QTDYFRV 678
              YF+V
Sbjct: 385 NQPYFKV 391


>SB_5360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +1

Query: 508 ISHIITRCLKIPCAVLMGANIASEVAEEKFCETTIGCRDVMLAPLMRDIIQTDYFRVVG 684
           I ++++R +K     L G N     A+E FC+ T+   D++      D+I TD   + G
Sbjct: 50  IENLVSRTIKSGFKALYGKNSVG-AAQEMFCKATLDATDIIDPMKKSDLIITDSSMMCG 107


>SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 616 NQWSFRRIFPQQPPMQYWLPLIQHREFLGIL 524
           NQ  F  + P   P +YW P+I  R F  +L
Sbjct: 408 NQRPFTLVVPDLQPRKYWWPIINSRAFETLL 438


>SB_6904| Best HMM Match : NifT (HMM E-Value=8.7)
          Length = 408

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 616 NQWSFRRIFPQQPPMQYWLPLIQHREFLGIL 524
           NQ  F  + P   P +YW P+I  R F  +L
Sbjct: 302 NQRPFTIVIPNLQPRRYWWPIINSRAFETLL 332


>SB_38574| Best HMM Match : WW (HMM E-Value=4.9)
          Length = 256

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 394 HQFVRTICSTLLGKIKPTAAALSLIKGFDIAEGGGIDLIS 513
           H+     C   + +IKP      +IKGF I    G +L S
Sbjct: 191 HERRNIACQRFVSRIKPENPLFPIIKGFHITHDSGYNLRS 230


>SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -3

Query: 680 TTLK*SVCMISRINGASITSRQPMVVSQNFSSATSDAILAPINTAQGIFRHLVI 519
           T L  S+        ASIT+     ++ + + ATSD +    NT+QG F   ++
Sbjct: 230 TQLVSSLAQQGTFPSASITTANESSMATSSTMATSDVVSMATNTSQGSFSQTML 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,047,389
Number of Sequences: 59808
Number of extensions: 390786
Number of successful extensions: 933
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)