Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30635
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    31   0.091
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    27   2.0  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    27   2.0  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    26   4.5  

>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 31.5 bits (68), Expect = 0.091
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
 Frame = +3

Query: 135  PDKYQYQYQTSNGISGQEQGALVNEGREDASIAVQG--SSGYTAPDGTPIQITYIADANG 308
            PD   +      G  G+E     + G   A+   +G  S GYT+P  + +   Y   +  
Sbjct: 1500 PDAAAFSPLVQGGSEGRE--GFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPS 1557

Query: 309  YQPSGAHLPTTPAPLP-IPDYIARAIEYIRTHP 404
            Y PS     T+PA +P  P Y   +  Y  T P
Sbjct: 1558 YSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSP 1590


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 473 CFNNSRPYQLSYNLNTLADLWLGWM 399
           CF+   P Q   NL + A+LW  WM
Sbjct: 372 CFDGYLPAQERSNLKSKAELWNEWM 396


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 20/84 (23%), Positives = 32/84 (38%)
 Frame = +3

Query: 105 QIVSQDADVFPDKYQYQYQTSNGISGQEQGALVNEGREDASIAVQGSSGYTAPDGTPIQI 284
           Q+ ++ +D+ PD        S G    E    + +   +    V  SS +    G    +
Sbjct: 96  QLATELSDLLPDGLDKTLFLSTGGEANEAALRMAKVYTNKYECVAFSSSWHGVTGGAASL 155

Query: 285 TYIADANGYQPSGAHLPTTPAPLP 356
           T+ A   GY P+     T P P P
Sbjct: 156 TFAAARRGYGPALPGSYTIPEPNP 179


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 195 ALVNEGREDASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAP 350
           AL+  G    S  VQ  + YT+  G P   T +A A  +  +G ++    +P
Sbjct: 43  ALLPTGLLMGSPFVQSPTSYTSMHGLPFSTTQMAAAPAHPTTGYNVSRVTSP 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,157,332
Number of Sequences: 5004
Number of extensions: 43120
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)