Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30635
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ...    33   0.14 
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ...    32   0.32 
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ...    32   0.32 
At3g61260.1 68416.m06856 DNA-binding family protein / remorin fa...    29   1.7  
At3g25950.1 68416.m03234 hypothetical protein                          29   2.9  
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10...    28   3.9  
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10...    28   3.9  
At4g33910.1 68417.m04812 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   9.0  

>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
            subunit (RPB205) (RPII) (RPB1) nearly identical to
            P|P18616 DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6) {Arabidopsis thaliana}
          Length = 1840

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = +3

Query: 243  SSGY--TAPDGTPIQITYIADANGYQP-SGAHLPTTPAPLPI-PDYIARAIEYIRTHP 404
            S GY  T+P  +P   TY   + GY P S A+ PT+P+  P  P Y   +  Y  T P
Sbjct: 1563 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1620


>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 219 DASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPLPIPDYIA 374
           D S  +   +   +P   P+ +  +  A G+ P GAH P  P P P+P  +A
Sbjct: 201 DHSCRLPNDARAPSPVNNPL-LGSLPKAEGFPPLGAHGPFQPTPSPVPTPLA 251


>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 219 DASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPLPIPDYIA 374
           D S  +   +   +P   P+ +  +  A G+ P GAH P  P P P+P  +A
Sbjct: 201 DHSCRLPNDARAPSPVNNPL-LGSLPKAEGFPPLGAHGPFQPTPSPVPTPLA 251


>At3g61260.1 68416.m06856 DNA-binding family protein / remorin
           family protein similar to DNA-binding protein gi|601843
           [Arabidopsis thaliana], remorin [Solanum tuberosum]
           GI:1881585; contains Pfam profiles PF03763: Remorin
           C-terminal region, PF03766: Remorin N-terminal region
          Length = 212

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 270 TPIQITYIADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKPE 416
           +P ++T  A A+   P+ A +P  PAP P P  + + +   +   P PE
Sbjct: 13  SPAKVTTPAPADTPAPAPAEIPA-PAPAPTPADVTKDVAEEKIQNPPPE 60


>At3g25950.1 68416.m03234 hypothetical protein
          Length = 251

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -2

Query: 412 GLGG*VLMYSMARAM*SGIGRGAGVVGRWAPEGW 311
           GL G V++Y MA     G G   GVV RWA   W
Sbjct: 187 GLAGPVVLYDMATFY--GSGAADGVVPRWAWLSW 218


>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
           WD-40 repeats (PF00400) (1 weak)
          Length = 1131

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 291 IADANGYQPSGAHLPTTPAPLPIPDYIA 374
           I  A G+ P GAH P  P   P+P  +A
Sbjct: 224 IPKAGGFPPLGAHGPFQPTASPVPTPLA 251


>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
           WD-40 repeats (PF00400) (1 weak)
          Length = 1131

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 291 IADANGYQPSGAHLPTTPAPLPIPDYIA 374
           I  A G+ P GAH P  P   P+P  +A
Sbjct: 224 IPKAGGFPPLGAHGPFQPTASPVPTPLA 251


>At4g33910.1 68417.m04812 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to prolyl 4-hydroxylase, alpha
           subunit, from Gallus gallus [GI:212530], Rattus
           norvegicus [GI:474940], Drosophila melanogaster
           [GI:4336512]; contains PF03171 2OG-Fe(II) oxygenase
           superfamily domain
          Length = 288

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -1

Query: 134 ENVSILRHNLGISFASAHDVRNVSDGYRDQSEEDVSS 24
           E+ +ILR+ LG  + S +DV N ++ Y  QS + ++S
Sbjct: 166 ESFNILRYELGQKYDSHYDVFNPTE-YGPQSSQRIAS 201


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,411,043
Number of Sequences: 28952
Number of extensions: 239286
Number of successful extensions: 857
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)