Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30634
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41990.1 68415.m05194 expressed protein                             31   0.54 
At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein si...    31   0.95 
At5g06580.1 68418.m00743 FAD linked oxidase family protein simil...    29   3.8  
At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein ...    29   3.8  
At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein ...    29   3.8  
At1g04500.1 68414.m00441 zinc finger CONSTANS-related similar to...    28   5.0  
At2g36650.1 68415.m04495 expressed protein                             28   6.7  
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea...    27   8.8  
At2g33350.1 68415.m04088 hypothetical protein                          27   8.8  

>At2g41990.1 68415.m05194 expressed protein 
          Length = 297

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 236 APLLMHYSRFLTCISRIFSFTTRVNGSLTNSIFLRMTHSLMLFQKIKF 93
           +PLL+HYS  L     +  FT   NG  TN + +   H + L+  + F
Sbjct: 194 SPLLLHYSNLLLSSGEMNKFTVGRNGE-TNVVTVVQGHQIPLYGGVSF 240


>At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 720

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 279 SFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIF 181
           SFV  + P GFP   P  D +F  P++   D+F
Sbjct: 213 SFVPPSSPYGFPSPGPFADDIFDFPSLPVTDLF 245


>At5g06580.1 68418.m00743 FAD linked oxidase family protein similar
           to SP|Q12627 from Kluyveromyces lactis and SP|P32891
           from Saccharomyces cerevisiae; contains Pfam FAD linked
           oxidases, C-terminal domain PF02913, Pfam FAD binding
           domain PF01565
          Length = 567

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = -2

Query: 672 NIEVDSNVASDAVVK--IFLAPKYDDNGIPLTLEDNWMKFFELDWFTTKLTAGQNKIIRN 499
           +I V    +++AVVK      PK   + +   LEDN    ++  +F  K     +K + N
Sbjct: 86  DITVGGKDSTEAVVKGEYKQVPKELISQLKTILEDNLTTDYDERYFHGKPQNSFHKAV-N 144

Query: 498 SNEFVIFKEDSVPMTEIMKMLDEGKVP 418
             + V+F      +++I+K  +E KVP
Sbjct: 145 IPDVVVFPRSEEEVSKILKSCNEYKVP 171


>At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 41  SFYIFFG-YYGCKIHQFIKI*FFGTTLDCV 127
           +FY+FF  + G KIHQ+I +  +   + CV
Sbjct: 27  AFYVFFAPFVGKKIHQYIAMGIYTPLITCV 56


>At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 41  SFYIFFG-YYGCKIHQFIKI*FFGTTLDCV 127
           +FY+FF  + G KIHQ+I +  +   + CV
Sbjct: 27  AFYVFFAPFVGKKIHQYIAMGIYTPLITCV 56


>At1g04500.1 68414.m00441 zinc finger CONSTANS-related similar to
           Zinc finger protein constans-like 15 (SP:Q9FHH8)
           {Arabidopsis thaliana}
          Length = 386

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 604 IVFGSQEDFDNSVTGDIRINLNV 672
           I+F SQ+DFDN +T  I  + ++
Sbjct: 85  IIFDSQDDFDNDITASIDFSSSI 107


>At2g36650.1 68415.m04495 expressed protein
          Length = 373

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = +1

Query: 247 EAKRLIVKNKRFERSQVLAFVVEWIDENKELEWESTFSTSR--QHESFRHVTELFRHIKR 420
           E K  IVK    +   + A+V    +E +EL  +S+ STS     E +R + E +  +K+
Sbjct: 206 ETKNNIVKELEGKVKDMEAYVDVLQEEKEELFMKSSNSTSEMVSVEDYRRIVEEYEELKK 265

Query: 421 -YFSFVEHLHNFSHWHGVFFKYD 486
            Y + V+ + N   W     +++
Sbjct: 266 DYANGVKEVINL-RWSNACLRHE 287


>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
           family protein contains Pfam profile: PF00400 WD domain,
           G-beta repeat (10 copies); similar to WD-repeat protein
           3 (SP:Q9UNX4) [Homo sapiens]
          Length = 955

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 681 FNVNIEVDSNVASDAVVKIFLAPKYDDNGI 592
           F V   VDSN+A D+  K  LAP  +  GI
Sbjct: 14  FGVISSVDSNIAYDSTGKYVLAPALEKVGI 43


>At2g33350.1 68415.m04088 hypothetical protein
          Length = 440

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 604 IVFGSQEDFDNSVTGDI 654
           I+F SQEDF+N +T  I
Sbjct: 127 IIFDSQEDFENDITASI 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,773,166
Number of Sequences: 28952
Number of extensions: 325407
Number of successful extensions: 864
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)