Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30633
         (832 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   5.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   5.2  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   6.9  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 328 HNSYPHRRVLAPTRPSSLS 384
           H+  PHR  + P  PSS S
Sbjct: 13  HHLEPHRMQIKPQSPSSSS 31



 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -3

Query: 665 KSVVGFSQKLPNCIISPSSAHVFNCLRA 582
           K V  F + L         AH F CLRA
Sbjct: 275 KEVADFQETLKKISQFQLDAHEFACLRA 302


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 328 HNSYPHRRVLAPTRPSSLS 384
           H+  PHR  + P  PSS S
Sbjct: 13  HHLEPHRMQIKPQSPSSSS 31



 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -3

Query: 665 KSVVGFSQKLPNCIISPSSAHVFNCLRA 582
           K V  F + L         AH F CLRA
Sbjct: 275 KEVADFQETLKKISQFQLDAHEFACLRA 302


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 666 LLLESSIIKGGNLCIWTKYF 725
           L L    I GG  C+W++ F
Sbjct: 540 LHLNKKQILGGEACLWSEQF 559


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,704
Number of Sequences: 336
Number of extensions: 3661
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22829180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)