Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30633
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   3.3  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     27   4.3  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    26   7.5  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   7.5  
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    26   7.5  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   10.0 

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = +3

Query: 45   EAPAPSTLGSLQNLNMDSMLRHTFVPDYSVKAIAELYYLTIKRSMYLA 188
            E P+   L  + N++ +++  + F  +YS+KA   L+ + IK++  +A
Sbjct: 1762 EHPSSIALHFVYNVDKENIYSYKFFSEYSIKASYWLHSIGIKKNDVVA 1809


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 300 VRENEESPKSQFVPSSASPRT-NSTFKS 380
           V ENE  PK Q VP++ SP   N+  +S
Sbjct: 220 VAENEPYPKPQSVPTTTSPNNENNALRS 247


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
 Frame = -1

Query: 802 YLVKVLT--RIL*RRRLYSN---QSVLTYQ*KYFVQMHRLPP-LIIDDSSNKSLLSVFLK 641
           +++ +L+  RI     LY+N   Q +  +  + F ++HR    LII +S NK L +   K
Sbjct: 277 FIILILSDARIKENTHLYANGEGQHIKNHLLELFKKLHRTQDFLIIAESINKFLSNPLKK 336

Query: 640 NYQIVSY 620
             QI+++
Sbjct: 337 ERQIITF 343


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 317 LFVLPDLLDPVAFAQQLIHFWFDLLI-SAALVEHPLLHERGA 195
           +F++PDL D V   + L   +FDL    AA+V+  L    GA
Sbjct: 247 IFIVPDLYDRVYVEKILDILFFDLHFGKAAIVQESLCTSFGA 288


>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -2

Query: 531 LIQNLTRSERQILLIYFVVVFYFGVAMFL 445
           ++QN   S +++L +Y + +FYF +A  +
Sbjct: 195 VLQNSNLSNKKLLAVYPLFLFYFSLAWII 223


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 285 DRIEEVRENEESPKSQFVPSSASPRTN 365
           D IE +RE  ESPKSQ  PS  +   N
Sbjct: 24  DVIETMRETNESPKSQ-NPSEEATTVN 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,208,212
Number of Sequences: 5004
Number of extensions: 62590
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)