Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30633
         (832 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21903| Best HMM Match : DUF21 (HMM E-Value=0)                       36   0.053
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.38 
SB_326| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   1.1  
SB_41539| Best HMM Match : PUD (HMM E-Value=0.42)                      29   4.6  
SB_18977| Best HMM Match : DUF834 (HMM E-Value=8.8)                    29   4.6  
SB_26936| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)               29   6.1  
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)                      29   6.1  

>SB_21903| Best HMM Match : DUF21 (HMM E-Value=0)
          Length = 1040

 Score = 35.5 bits (78), Expect = 0.053
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +3

Query: 114  FVPDYSVKAIAELYYLTIKRSMYLAAKRATLMEK 215
            +VPDY+   +  L Y+ + R+MY  AKRAT+ME+
Sbjct: 930  YVPDYTF--VRYLTYIKVPRAMYWRAKRATMMER 961


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 58  RRPSAPCRTST--WTRCCATPSYPTTQSRPSLNYTTS 162
           R PS PC  ST       +TPS P+T S PSL +T S
Sbjct: 420 RTPSTPCTHSTPGTPSTPSTPSTPSTPSTPSLTHTPS 456



 Score = 32.3 bits (70), Expect = 0.50
 Identities = 19/43 (44%), Positives = 22/43 (51%)
 Frame = +1

Query: 55  HRRPSAPCRTSTWTRCCATPSYPTTQSRPSLNYTTSPSNGQCT 183
           H  PSAP   ST +  C TPS P+T S PS   T S  +   T
Sbjct: 63  HSTPSAPSTPSTPSTPC-TPSTPSTPSTPSTPSTPSTPSAPST 104



 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +1

Query: 64  PSAPCRTSTWTRCCATPSYPTTQSRPSLNYTTS 162
           PS PC  ST     +TPS P+T S PS   T S
Sbjct: 75  PSTPCTPST-PSTPSTPSTPSTPSTPSAPSTPS 106



 Score = 28.3 bits (60), Expect = 8.1
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = +1

Query: 64  PSAPCRTSTWTRCC-----ATPSYPTTQSRPSLNYTTSPSNGQCT 183
           PS PC  ST +        +TPS P T S PS   T S  +  CT
Sbjct: 36  PSTPCTPSTPSTPSTPITPSTPSTPCTHSTPSAPSTPSTPSTPCT 80


>SB_326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 766 RRLYSNQSVLTYQ*KYFVQM--HRLPPLIIDDSSNKSLLSVFLKNY 635
           R LY   SVL Y  +YF ++  HRLP     D  N+   S  L+NY
Sbjct: 392 RDLYMVTSVLDYDKEYFAKVSDHRLPMSFCPDLLNRKEPSEVLENY 437


>SB_41539| Best HMM Match : PUD (HMM E-Value=0.42)
          Length = 1582

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +3

Query: 168  KRSMYLAAKRATLMEKGVLNKGGTNEQIEPEVDKLLREGDRIEEVRENEES 320
            K+     A  A  +E GV  K G NE+ E EV K + E +        EES
Sbjct: 1264 KKKRKAEAAAAAAVEVGVEVKEGENEEEEEEVKKDIAEEEEAAPAEPEEES 1314


>SB_18977| Best HMM Match : DUF834 (HMM E-Value=8.8)
          Length = 119

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +3

Query: 168 KRSMYLAAKRATLMEKGVLNKGGTNEQIEPEVDKLLREGDRIEEVRENEES 320
           K+     A  A  +E GV  K G NE+ E EV K + E +        EES
Sbjct: 30  KKKRKAEAAAAAAVEVGVEVKEGENEEEEEEVKKDIAEEEEAAPAEPEEES 80


>SB_26936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +3

Query: 168 KRSMYLAAKRATLMEKGVLNKGGTNEQIEPEVDKLLREGDRIEEVRENEES 320
           K+     A  A  +E GV  K G NE+ E EV K + E +        EES
Sbjct: 279 KKKRKAEAAAAAAVEVGVEVKEGENEEEEEEVKKDIAEEEEAAPAEPEEES 329


>SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)
          Length = 1341

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = +1

Query: 109 TPSYPTTQSRPSLNYTTSPSNGQCT*RLNAPRS 207
           TP  P     PSL Y  SP NG C   L  P S
Sbjct: 407 TPMEPNGFPIPSLKYFNSPQNGICPTALTPPVS 439


>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
          Length = 892

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 118 TKVWRSIESMLRFCREPRVDGAGASASPTFWVRACTPK 5
           T+ WR +   +R  R+    GA A A P F V A   K
Sbjct: 83  TRAWRRLRERVRGLRDRLFPGAAAPAQPKFAVSAIKKK 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,495,466
Number of Sequences: 59808
Number of extensions: 497616
Number of successful extensions: 1463
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)