Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30633
         (832 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g25440.1 68414.m03159 zinc finger (B-box type) family protein...    30   1.6  
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont...    29   5.0  
At1g29840.1 68414.m03647 esterase/lipase/thioesterase family pro...    28   6.6  
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea...    28   8.7  
At3g43530.1 68416.m04621 hypothetical protein contains Pfam prof...    28   8.7  
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ...    28   8.7  
At1g06770.2 68414.m00719 zinc finger (C3HC4-type RING finger) fa...    28   8.7  
At1g06770.1 68414.m00720 zinc finger (C3HC4-type RING finger) fa...    28   8.7  

>At1g25440.1 68414.m03159 zinc finger (B-box type) family protein
           similar to zinc finger protein GI:3618318 from [Oryza
           sativa]
          Length = 417

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
 Frame = +3

Query: 93  DSMLRHTFVPDYSVKAIAELYYLTIKRSMYLAAKRATLMEKGVLNKGGTNEQIEPEVD-K 269
           +S + H  VPD S++   + Y L  +    +      + E+ +      N+ +EP+++  
Sbjct: 103 NSSIFHDLVPDISIEDQTDNYELEEQLICQVPVLDPLVSEQFL------NDVVEPKIEFP 156

Query: 270 LLREGDRIEEVRENEESPKSQFVPS 344
           ++R G  IEE  +N ES  + F P+
Sbjct: 157 MIRSGLMIEEEEDNAESCLNGFFPT 181


>At1g74190.1 68414.m08592 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.1
           [Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
          Length = 965

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 9   GVQALTQNVGLAEAPAPSTLGSLQNLNMDSMLRHTFVPDYSVKAIAELYYLTI 167
           G++ L  +        PS+LGSLQ+L   S+  + F   +S  ++A L  L +
Sbjct: 269 GLRVLDLSSNKLTGTVPSSLGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMV 321


>At1g29840.1 68414.m03647 esterase/lipase/thioesterase family
           protein low similarity to cinnamoyl ester hydrolase CinI
           [Butyrivibrio fibrisolvens] GI:1622732; contains
           Interpro entry IPR000379
          Length = 263

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 724 KYFVQMHRLPPLIIDDSSNKSLLSVFLKNYQ 632
           +YF  M+R+ P+II  S    ++ V+   YQ
Sbjct: 99  RYFTNMNRVVPIIIGHSKGGDVVLVYASKYQ 129


>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
            family protein similar to WD-repeat protein 9 (SP:Q9NSI6)
            {Homo sapiens}; contains Pfam PF00400: WD domain, G-beta
            repeat (4 copies)
          Length = 1677

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 5    LRSASSDPERGTSGGSCTVDPRLPAEPQHGLDAA 106
            L  +S D    T G  CT D R+P     GLD +
Sbjct: 1003 LPGSSCDVPSPTLGNGCTEDSRIPGNQFEGLDVS 1036


>At3g43530.1 68416.m04621 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 615

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +3

Query: 195 RATLMEKGVLNKGGTNE----QIEPEVDKLLREGDRIEEVRENE 314
           R   +E+G    GG NE    + E E+DK + +GD   EV E E
Sbjct: 425 RENELEEGSDANGGDNEREVREKETEIDKEVAQGDNEREVGEKE 468


>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains Pfam
           profile: PF00076 RNA recognition motif (aka RRM, RBD, or
           RNP domain)
          Length = 382

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +3

Query: 189 AKRATLMEKGVLNKGGTNEQIEPEVDKLLREGDRIEEVRENEESPKSQFVPSSA 350
           A+   + EK +  K  +  + E + +K  ++  + EEV E E+SP     P  +
Sbjct: 26  AEELAVREKKISKKHKSKSKEEEKPEKSKKKSKKYEEVEEEEKSPSPSPSPKKS 79


>At1g06770.2 68414.m00719 zinc finger (C3HC4-type RING finger)
           family protein
          Length = 307

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 231 GGTNEQIEPEVDKLLREGDRIEEVRENEESPKSQFVPSSASPRTNSTF 374
           G T  + +    K LR G   E   + EES   + + S++SP T + F
Sbjct: 7   GTTRRRTKAPTRKELRNGSLAERTVKKEESSGDELLESTSSPDTLNKF 54


>At1g06770.1 68414.m00720 zinc finger (C3HC4-type RING finger)
           family protein
          Length = 421

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 231 GGTNEQIEPEVDKLLREGDRIEEVRENEESPKSQFVPSSASPRTNSTF 374
           G T  + +    K LR G   E   + EES   + + S++SP T + F
Sbjct: 121 GTTRRRTKAPTRKELRNGSLAERTVKKEESSGDELLESTSSPDTLNKF 168


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,806,499
Number of Sequences: 28952
Number of extensions: 328510
Number of successful extensions: 866
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)