Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30632
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    29   0.91 
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    28   1.6  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    27   2.1  

>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 282 RSEATKTFEDETRRIRADTAALIHRARSVVPRAKSLAPLDTIYSYSYGEPIPYRFSNDAY 461
           ++  +K +ED T    A +    +  R  + R+++L P   +  Y YG+P P R S  A 
Sbjct: 178 KNHLSKIYEDHTSEKGASSVISSNITRQGIKRSRTL-PW-AVDPYRYGDPDPKRTSTSAD 235

Query: 462 IAK 470
           I++
Sbjct: 236 ISQ 238


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +1

Query: 481 PYAASRIASTIFPSITSQPRSSLDAATSRACTTPVRRPSPTVGHFTRSS-ASGDDVNLLS 657
           P +A+  A T   SIT+ P+SS  ++ SR   +  R  SPT  +   +S AS +     S
Sbjct: 141 PSSAASGARTQRTSITNDPQSSQSSSVSRNPASS-RAGSPTRDNAPAASPASSEPRTFSS 199

Query: 658 FYAKNRLAAAGSGRRECNSGR 720
           F  +      G  RR  N GR
Sbjct: 200 FEDQYGRLPPGWERRTDNLGR 220


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 582 GKKAFSNRRPLYKELSIRG*REPALVLREEQARGR 686
           GKK           L+ RG R+P L+LREE+ R R
Sbjct: 390 GKKELEASSNDASRLTQRGRRDPGLLLREEKIRKR 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,246
Number of Sequences: 5004
Number of extensions: 57420
Number of successful extensions: 163
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)