Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30632
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_22120| Best HMM Match : 7tm_1 (HMM E-Value=0.0013)                  29   3.0  
SB_20777| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_14965| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)                  28   9.1  
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_8274| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.1  

>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +1

Query: 592 PSPTVGHFTRSSASGDDVNLLSFYAKNRLAAAGSGRRECN 711
           P   V  FT S AS D  NLL   +KNR   A + R  CN
Sbjct: 243 PLDLVEQFTSSRASADIKNLLRDASKNRKVTAKALRDYCN 282


>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 791

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = -3

Query: 359 SPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRDG--QCWAASVSDSVQLTEDHGWADPD 186
           SP  Q+ ++G+ S  +  E++   G     DGRD   + W     DS + +E   W  P 
Sbjct: 581 SPPRQAEAIGS-SRDVGKETVRDGGRDSGRDGRDTGRESWRDGARDSGRDSERKRWPRPP 639

Query: 185 PHHVMRHIRVRHESSYRPRCRTVNQFSRHA 96
                RH      SS  P  +TV + S +A
Sbjct: 640 SPEPARHSHPDVTSSQSPALKTVKRPSDNA 669


>SB_22120| Best HMM Match : 7tm_1 (HMM E-Value=0.0013)
          Length = 313

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -2

Query: 612 VAYGWRRPSYRSSAR---TRGCRVQ*TSWLTRDRRKD 511
           + Y WR P YR++ R     GCR+     ++RDRR D
Sbjct: 276 LVYAWRLPKYRNAFREALCNGCRIV-ELVMSRDRRTD 311


>SB_20777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -3

Query: 359 SPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRDGQCWAASVSDSVQLTED 207
           S  D    +GAN T +   S  C G Q  I+G D    A  V+DS +  +D
Sbjct: 194 SEEDNGSLLGAN-TEICHSSCHCQGCQSQIEGDDTPVAAREVADSCETIQD 243


>SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 213 RELDRIAYRRRPALAISAVDDFLRSEATKTFEDETRRIRADTAALIHRARS 365
           + ++R    RRP+L    V  F  + +    EDE   +RA    L HR RS
Sbjct: 90  KRMERKKKGRRPSLFRRFVGAFRNNPSNSEAEDEESELRAPPDYLSHRRRS 140


>SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 261 SAVDDFLRSEATKTFEDETRRIRADTAALIHRARSVVPRAKSLAPLDTIYSYSYGEP 431
           + +D FL++ A          + ADTAA +  A   V  +K +  L T+ S ++  P
Sbjct: 661 TVLDSFLKASAAGGLGSVKAEVLADTAAALASANVQVVSSKVIGRLHTLISKTFISP 717


>SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +1

Query: 439 TVSAMTLTLLSFWCPYAASRIASTIFPSITSQPRSSLDAATSRACTTPVRRPSPTVGHFT 618
           +V+A T+T            I +T+  +      +   A  S A +T   RPSPT+ H +
Sbjct: 714 SVAAATVTSSPNVTTQTMPVITNTVTSTSIINSGTPTSAMASSASSTTEIRPSPTINHMS 773

Query: 619 RSSA 630
            +SA
Sbjct: 774 TTSA 777


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = +1

Query: 442  VSAMTLTLLSFWCPYAASRIASTIFPSITSQPRSSLD--AATSRACTTPVRRPSPTVGHF 615
            V+A T ++++     A+S I +    +I++   SS+   AAT+    +     +PTV HF
Sbjct: 1242 VTASTASVVTTTATIASSTITTPSLSAISTTTASSVQVSAATNFESFSAAIISNPTVQHF 1301

Query: 616  TRSSASGDDV 645
            + S+ S  ++
Sbjct: 1302 SASAQSASEL 1311


>SB_14965| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
 Frame = +1

Query: 433 SRTVSAMTLT---LLSFWCPYAASRIASTIFPSITSQPRSSLDAATSRACTTPVRRPSPT 603
           SR++ A +LT    + F+    A  I S+   ++  +P  ++ A T    T+P  + +PT
Sbjct: 182 SRSLQAHSLTDQLAIEFFL-LPAKTIVSSCLATLLVRPLETIPAPTLTTPTSPALKETPT 240

Query: 604 VGHFTRSSASGDDVNLLSFYAKNRL 678
            G  +  +A  D  +     AK RL
Sbjct: 241 PGLESAPAAMPDATDTAWVTAKARL 265


>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
          Length = 1089

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 253 WPSLPSMTSCAPKQPRLSKMRPVEFAPT 336
           W  L      +PK PR+ ++  V+FAPT
Sbjct: 465 WDQLEENDVASPKSPRVDQVVRVQFAPT 492


>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
 Frame = -3

Query: 362 ASPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRDGQCWAASVSDSVQLTEDHGWADP-- 189
           A P   + + G   T ++ +  G +   + +    G+C   S  ++  L+    W D   
Sbjct: 407 AKPAVTAANTGNMDTPVVNDR-GMYSCPKRMQTGPGECNPPSPKEANDLSRVKQWVDQLC 465

Query: 188 DPHHVMRHIRVRHESSYRPRCR 123
             H +    R +H  SYR  CR
Sbjct: 466 AAHELETVTRSKHRKSYRHACR 487


>SB_8274| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 253 WPSLPSMTSCAPKQPRLSKMRPVEFAPT 336
           W  L      +PK PR+ ++  V+FAPT
Sbjct: 164 WDQLEENDVASPKSPRVDQVVRVQFAPT 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,289,516
Number of Sequences: 59808
Number of extensions: 503001
Number of successful extensions: 1486
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1485
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)