Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30632
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23330.1 68414.m02917 expressed protein                             30   1.8  
At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family pr...    29   4.3  
At2g36020.1 68415.m04423 abscisic acid-responsive HVA22 family p...    29   4.3  
At2g21235.1 68415.m02522 bZIP protein-related similar to VirE2-i...    29   4.3  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    29   4.3  
At1g48560.1 68414.m05430 expressed protein                             28   5.6  
At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family ...    28   7.4  
At5g63420.1 68418.m07962 metallo-beta-lactamase family protein         27   9.8  
At5g20250.2 68418.m02411 raffinose synthase family protein / see...    27   9.8  
At5g20250.1 68418.m02410 raffinose synthase family protein / see...    27   9.8  
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ...    27   9.8  
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ...    27   9.8  

>At1g23330.1 68414.m02917 expressed protein
          Length = 471

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 168 AHQGTSRVELP-TEMSDGKSVQPSRCRWTCRADASCRSHSRIPWLMLVLSFGF 13
           A  GT+R  +   +  DGKS++P      C+          IPWL    +FGF
Sbjct: 206 ALNGTTRTYIDGIQPEDGKSLKPISLLQICKLGVIMYDWIDIPWLKSYYNFGF 258


>At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 366

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 583 VRRPSPTVGHFTRSSASGDDVNLLSFYAKNRLAAAGSGRRE 705
           V+  S  VGH   +SASG +++  SF +   L  A +G R+
Sbjct: 95  VQEESHRVGHSVTASASGTNMSWASFESGRSLKTARTGDRD 135


>At2g36020.1 68415.m04423 abscisic acid-responsive HVA22 family
           protein weak similarity to SP|Q00765 Polyposis locus
           protein 1 (TB2 protein) {Homo sapiens}; contains Pfam
           profile PF03134: TB2/DP1, HVA22 family
          Length = 258

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 544 SLDAATSRACTTPVRRPSPTVGHFTRSSASGDD-VNLLSFYAKNRLAAAGSGRRECNS 714
           SL+  TSR    P   P PT G  +  + +GDD VN+      + L  A +  R  NS
Sbjct: 195 SLEKQTSRGRKWPPPTPPPTPGRDSAGTFNGDDGVNIPDTIPGSPLTDARAKLRRSNS 252


>At2g21235.1 68415.m02522 bZIP protein-related similar to
           VirE2-interacting protein VIP1 [Arabidopsis thaliana]
           GI:7258340, tbZIP transcription factor [Arabidopsis
           thaliana] GI:17065884
          Length = 550

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 505 STIFPSITSQPRSSLDAATSRACTTPVRRPSPTVGHFTRSSAS 633
           +++ P +   P  S D +    CTT   +PSPT   FT++S S
Sbjct: 32  TSLSPPLIRYPAGSPDFSPGPRCTT---QPSPTFSDFTQASPS 71


>At2g17930.1 68415.m02076 FAT domain-containing protein /
           phosphatidylinositol 3- and 4-kinase family protein
           contains Pfam profiles PF02259 FAT domain, PF00454
           Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
           domain
          Length = 3795

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 571 THARLPRPVNFLADS**KERLWMLSATLRRGTKSLAM 461
           THA LPRP  F      ++ +W  S  L+ G   LA+
Sbjct: 450 THAHLPRPQGFKGMR--EDEVWKASGVLKSGVHCLAL 484


>At1g48560.1 68414.m05430 expressed protein
          Length = 643

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 526 TSQPRSSLDAATSRACTTPVRRP-SPTVGHFTRS 624
           T  PR+S +++T +AC T VRR      GH ++S
Sbjct: 236 TRSPRTSSNSSTMKACETMVRRAVHEDDGHLSKS 269


>At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family
           protein / snRNP family protein contains similarity to
           U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo
           sapiens] gi|2708307|gb|AAC51926
          Length = 786

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 184 GSGSAHPWSSVSWTESLTDAAQHWPSLPSMTSCAPKQPRLSKMRPV 321
           GSG+ +P S V      T  A  + S+PS  S AP Q  L+K+  +
Sbjct: 147 GSGATNPTSGV------TMGASTYSSIPSEASAAPSQTLLTKVSSI 186


>At5g63420.1 68418.m07962 metallo-beta-lactamase family protein 
          Length = 911

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +1

Query: 478 CPYA-----ASRIASTIFPSITSQPRSSLDAATSRACTTPVRR 591
           CPY      +SRI ST+  S+TS P S     TS +  TP RR
Sbjct: 41  CPYTFTFRQSSRIKSTVSCSVTSAPAS----GTSSSSKTPRRR 79


>At5g20250.2 68418.m02411 raffinose synthase family protein / seed
           imbibition protein, putative (din10) similar to seed
           imbibition protein GB:AAA32975 GI:167100 from [Hordeum
           vulgare]; contains nonconsensus AT donor splice site at
           intron 1; contains Pfam profile PF05691: Raffinose
           synthase or seed imbibition protein Sip1; identical to
           cDNA seed imbibition protein (din10) partial cds
           GI:10834551
          Length = 749

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
 Frame = +3

Query: 279 LRSEATKTFEDE--TRRIRADTAALIHRARSVVPRAKS-LAPLDTIYSYSYGEPIPYRFS 449
           L S   K F D      +  +T AL    ++ V RA     P D +    +   + Y   
Sbjct: 409 LDSSVAKNFPDNGCIACMSHNTDALYCSKQAAVIRASDDFYPRDPVSHTIHIASVAY--- 465

Query: 450 NDAYIAKLLVPLRSVADSIHNLSFYHESAKKFTGRGNLACVHYSGKKAFSNRRPL 614
           N  ++ + + P   +  S+H  + YH SA+  +G G L      GK  F   R L
Sbjct: 466 NSVFLGEFMQPDWDMFHSVHPAAEYHASARAISG-GPLYVSDSPGKHNFELLRKL 519


>At5g20250.1 68418.m02410 raffinose synthase family protein / seed
           imbibition protein, putative (din10) similar to seed
           imbibition protein GB:AAA32975 GI:167100 from [Hordeum
           vulgare]; contains nonconsensus AT donor splice site at
           intron 1; contains Pfam profile PF05691: Raffinose
           synthase or seed imbibition protein Sip1; identical to
           cDNA seed imbibition protein (din10) partial cds
           GI:10834551
          Length = 844

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
 Frame = +3

Query: 279 LRSEATKTFEDE--TRRIRADTAALIHRARSVVPRAKS-LAPLDTIYSYSYGEPIPYRFS 449
           L S   K F D      +  +T AL    ++ V RA     P D +    +   + Y   
Sbjct: 504 LDSSVAKNFPDNGCIACMSHNTDALYCSKQAAVIRASDDFYPRDPVSHTIHIASVAY--- 560

Query: 450 NDAYIAKLLVPLRSVADSIHNLSFYHESAKKFTGRGNLACVHYSGKKAFSNRRPL 614
           N  ++ + + P   +  S+H  + YH SA+  +G G L      GK  F   R L
Sbjct: 561 NSVFLGEFMQPDWDMFHSVHPAAEYHASARAISG-GPLYVSDSPGKHNFELLRKL 614


>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 240 RRPALAISAVDDFLRSEATKTFEDETRRIRADT 338
           RRP +    VDD  R E  +  E+E   + A+T
Sbjct: 120 RRPVVKFKPVDDHDRIEGREAAEEEDNNVEAET 152


>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 240 RRPALAISAVDDFLRSEATKTFEDETRRIRADT 338
           RRP +    VDD  R E  +  E+E   + A+T
Sbjct: 120 RRPVVKFKPVDDHDRIEGREAAEEEDNNVEAET 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,741,971
Number of Sequences: 28952
Number of extensions: 331060
Number of successful extensions: 988
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)