Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30631
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   124   7e-30
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    58   7e-10
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    58   9e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    51   8e-08
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    42   5e-05
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    37   0.002
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    28   0.62 
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    28   0.83 
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    26   2.5  
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|...    25   4.4  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    25   5.8  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    25   5.8  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   5.8  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  124 bits (299), Expect = 7e-30
 Identities = 55/62 (88%), Positives = 61/62 (98%)
 Frame = -3

Query: 468 QKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 289
           QKEI ALAPS++K+KI+APPERKYSVWIGGSILASLSTFQQMWISK+EYDESGPGIV+RK
Sbjct: 314 QKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRK 373

Query: 288 CF 283
           CF
Sbjct: 374 CF 375


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 58.0 bits (134), Expect = 7e-10
 Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 6/67 (8%)
 Frame = -3

Query: 468 QKEIXALAPSTIKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKEEYDESGP--- 307
           Q E+  L P + ++KI A     ER Y+ W+GGSIL+SL TF Q+WIS++EY+E G    
Sbjct: 367 QNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRL 425

Query: 306 GIVHRKC 286
            ++ ++C
Sbjct: 426 ALIEKRC 432


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 57.6 bits (133), Expect = 9e-10
 Identities = 26/60 (43%), Positives = 43/60 (71%)
 Frame = -3

Query: 462 EIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 283
           E+ A++    ++KI A PER ++ W+GGSILASLSTF+++ I+ EEY ++   ++ R+ F
Sbjct: 321 ELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 51.2 bits (117), Expect = 8e-08
 Identities = 20/29 (68%), Positives = 24/29 (82%)
 Frame = -3

Query: 396 SVWIGGSILASLSTFQQMWISKEEYDESG 310
           +VW GGSILASL  FQ +W+SK+EYDE G
Sbjct: 390 AVWFGGSILASLDNFQHLWVSKQEYDEVG 418


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 41.9 bits (94), Expect = 5e-05
 Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
 Frame = -3

Query: 432 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 310
           K+KI   P R+++V+IGG++LA  ++    MW+SK E++E G
Sbjct: 337 KVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 435 IKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 292
           + + +I+   ++ +VW GGS+LA    F     +K +Y+E G  I  R
Sbjct: 372 VDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = -3

Query: 468 QKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 307
           ++E+ ++ P    I +          W G S  +    F+   +++EEY E GP
Sbjct: 655 KRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -3

Query: 390 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 289
           ++GGSI+A  S  + +   +++ EEY + GP  +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 465 KEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLST 355
           KEI + A S I +  + P E+    W    ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248


>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 227 ELGRAQHHTAPGSRGRAA*KHLRWT 301
           E+ R++ H+ PGS+G A   +L WT
Sbjct: 46  EISRSETHSIPGSKGEA---NLIWT 67


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 439 DHQDQDHRSPREEVLRMDRWIHPG 368
           D  D+  R+  E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = -3

Query: 429 IKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 289
           I +I PP   + ++  W G  I   +    ++WI   ++   G  ++  K
Sbjct: 563 ISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDWKMLGSRVLQYK 612


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -1

Query: 236 VRVLNATVSTLYLVIP--EN*TSNLTPSILM*FIVKFYINLISFLFLLYTRDRCGSQR 69
           VR  +A  S  +L  P   N  SN TP+ +   I K   N+ S  + L   D C   R
Sbjct: 575 VRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNEDACALSR 632


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,561,680
Number of Sequences: 5004
Number of extensions: 26393
Number of successful extensions: 58
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)