Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30631
         (470 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)              126   7e-30
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)             124   3e-29
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)              124   3e-29
SB_56628| Best HMM Match : Actin (HMM E-Value=0)                      124   3e-29
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)             123   7e-29
SB_56| Best HMM Match : Actin (HMM E-Value=0)                         123   7e-29
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)                111   3e-25
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)                 48   3e-06
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)                  34   0.052
SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37)                  27   7.8  

>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score =  126 bits (305), Expect = 7e-30
 Identities = 58/62 (93%), Positives = 60/62 (96%)
 Frame = -3

Query: 468 QKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 289
           QKEI ALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRK
Sbjct: 288 QKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRK 347

Query: 288 CF 283
           CF
Sbjct: 348 CF 349


>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score =  124 bits (300), Expect = 3e-29
 Identities = 57/62 (91%), Positives = 59/62 (95%)
 Frame = -3

Query: 468 QKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 289
           QKEI ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRK
Sbjct: 277 QKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRK 336

Query: 288 CF 283
           CF
Sbjct: 337 CF 338


>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score =  124 bits (300), Expect = 3e-29
 Identities = 57/62 (91%), Positives = 59/62 (95%)
 Frame = -3

Query: 468 QKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 289
           QKEI ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRK
Sbjct: 314 QKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 373

Query: 288 CF 283
           CF
Sbjct: 374 CF 375


>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
          Length = 376

 Score =  124 bits (300), Expect = 3e-29
 Identities = 57/62 (91%), Positives = 59/62 (95%)
 Frame = -3

Query: 468 QKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 289
           QKEI ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRK
Sbjct: 315 QKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 374

Query: 288 CF 283
           CF
Sbjct: 375 CF 376


>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score =  123 bits (297), Expect = 7e-29
 Identities = 56/62 (90%), Positives = 59/62 (95%)
 Frame = -3

Query: 468 QKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 289
           QKEI +LAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRK
Sbjct: 315 QKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 374

Query: 288 CF 283
           CF
Sbjct: 375 CF 376


>SB_56| Best HMM Match : Actin (HMM E-Value=0)
          Length = 375

 Score =  123 bits (297), Expect = 7e-29
 Identities = 56/62 (90%), Positives = 59/62 (95%)
 Frame = -3

Query: 468 QKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 289
           QKEI +LAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRK
Sbjct: 314 QKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 373

Query: 288 CF 283
           CF
Sbjct: 374 CF 375


>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
          Length = 149

 Score =  111 bits (267), Expect = 3e-25
 Identities = 50/62 (80%), Positives = 56/62 (90%)
 Frame = -3

Query: 468 QKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 289
           QKEI  LA +++K+K+IAPPERKYSVWIGGSILASLSTFQQMWI+KEEY E GP IVHRK
Sbjct: 88  QKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAKEEYHEYGPPIVHRK 147

Query: 288 CF 283
           CF
Sbjct: 148 CF 149


>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
          Length = 543

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 21/56 (37%), Positives = 33/56 (58%)
 Frame = -3

Query: 450 LAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 283
           + P  I+ ++I+   ++Y+VW GGS+LAS   F  +  +K +YDE GP I     F
Sbjct: 285 IKPKPIETQVISHHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340


>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = -3

Query: 432 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 310
           KI+I  PP RK+ V++GG++LA  +      W++++EY+E G
Sbjct: 358 KIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399


>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
          Length = 240

 Score = 34.3 bits (75), Expect = 0.052
 Identities = 15/38 (39%), Positives = 28/38 (73%), Gaps = 3/38 (7%)
 Frame = -3

Query: 465 KEIXALAPSTIKIKIIA---PPERKYSVWIGGSILASL 361
           +E+ +  P ++++K+I+     E++++ WIGGSILASL
Sbjct: 193 RELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILASL 230


>SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37)
          Length = 352

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 187 SGITRYNVLTVAFRTRTSTTPHSTGVT 267
           +GIT  N++T A  T TSTT  +  VT
Sbjct: 294 NGITNTNIITTATTTTTSTTISTITVT 320


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,096,615
Number of Sequences: 59808
Number of extensions: 233237
Number of successful extensions: 668
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)