Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30631
(470 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 126 6e-30
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 126 6e-30
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 126 6e-30
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 126 6e-30
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 126 6e-30
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 126 6e-30
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 126 6e-30
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 126 6e-30
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 126 6e-30
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 124 3e-29
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 120 4e-28
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 83 1e-16
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 66 9e-12
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 51 5e-07
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 50 8e-07
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 35 0.034
Z75545-1|CAB61025.1| 665|Caenorhabditis elegans Hypothetical pr... 27 6.8
AB000913-1|BAA21715.1| 665|Caenorhabditis elegans UNC-14 protein. 27 6.8
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 126 bits (305), Expect = 6e-30
Identities = 58/62 (93%), Positives = 60/62 (96%)
Frame = -3
Query: 468 QKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 289
QKEI ALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRK
Sbjct: 315 QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 374
Query: 288 CF 283
CF
Sbjct: 375 CF 376
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 126 bits (305), Expect = 6e-30
Identities = 58/62 (93%), Positives = 60/62 (96%)
Frame = -3
Query: 468 QKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 289
QKEI ALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRK
Sbjct: 315 QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 374
Query: 288 CF 283
CF
Sbjct: 375 CF 376
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 126 bits (305), Expect = 6e-30
Identities = 58/62 (93%), Positives = 60/62 (96%)
Frame = -3
Query: 468 QKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 289
QKEI ALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRK
Sbjct: 315 QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 374
Query: 288 CF 283
CF
Sbjct: 375 CF 376
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 126 bits (305), Expect = 6e-30
Identities = 58/62 (93%), Positives = 60/62 (96%)
Frame = -3
Query: 468 QKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 289
QKEI ALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRK
Sbjct: 315 QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 374
Query: 288 CF 283
CF
Sbjct: 375 CF 376
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 126 bits (305), Expect = 6e-30
Identities = 58/62 (93%), Positives = 60/62 (96%)
Frame = -3
Query: 468 QKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 289
QKEI ALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRK
Sbjct: 315 QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 374
Query: 288 CF 283
CF
Sbjct: 375 CF 376
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 126 bits (305), Expect = 6e-30
Identities = 58/62 (93%), Positives = 60/62 (96%)
Frame = -3
Query: 468 QKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 289
QKEI ALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRK
Sbjct: 315 QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 374
Query: 288 CF 283
CF
Sbjct: 375 CF 376
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 126 bits (305), Expect = 6e-30
Identities = 58/62 (93%), Positives = 60/62 (96%)
Frame = -3
Query: 468 QKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 289
QKEI ALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRK
Sbjct: 271 QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 330
Query: 288 CF 283
CF
Sbjct: 331 CF 332
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 126 bits (305), Expect = 6e-30
Identities = 58/62 (93%), Positives = 60/62 (96%)
Frame = -3
Query: 468 QKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 289
QKEI ALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRK
Sbjct: 301 QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 360
Query: 288 CF 283
CF
Sbjct: 361 CF 362
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 126 bits (305), Expect = 6e-30
Identities = 58/62 (93%), Positives = 60/62 (96%)
Frame = -3
Query: 468 QKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 289
QKEI ALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRK
Sbjct: 315 QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 374
Query: 288 CF 283
CF
Sbjct: 375 CF 376
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 124 bits (299), Expect = 3e-29
Identities = 57/62 (91%), Positives = 59/62 (95%)
Frame = -3
Query: 468 QKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 289
QKEI LAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRK
Sbjct: 314 QKEIQHLAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 373
Query: 288 CF 283
CF
Sbjct: 374 CF 375
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 120 bits (290), Expect = 4e-28
Identities = 57/62 (91%), Positives = 59/62 (95%)
Frame = -3
Query: 468 QKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 289
QKEI ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRK
Sbjct: 315 QKEITALAP-TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 373
Query: 288 CF 283
CF
Sbjct: 374 CF 375
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 82.6 bits (195), Expect = 1e-16
Identities = 37/56 (66%), Positives = 42/56 (75%), Gaps = 3/56 (5%)
Frame = -3
Query: 444 PSTIKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKC 286
P TIK+++ A P ERKY WIGGSIL SL TFQQMW+SK EYDESG IV +KC
Sbjct: 380 PPTIKLRVFAAPTQAERKYGAWIGGSILGSLGTFQQMWVSKAEYDESGKSIVEKKC 435
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 66.5 bits (155), Expect = 9e-12
Identities = 28/60 (46%), Positives = 42/60 (70%)
Frame = -3
Query: 462 EIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 283
E+ +AP+ KI+I A ER WIGGSI+ASL TF++MW+ K+EY++ G +H++ F
Sbjct: 315 EMRKIAPADGKIRISASQERNSLTWIGGSIVASLDTFRKMWLGKKEYEDMGASAMHKRFF 374
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 50.8 bits (116), Expect = 5e-07
Identities = 23/50 (46%), Positives = 33/50 (66%)
Frame = -3
Query: 450 LAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGI 301
L P I +++I+ ++Y+VW GGS+LAS S F Q+ +K EY E GP I
Sbjct: 365 LKPKPIDVQVISHKMQRYAVWFGGSMLASTSEFYQVSHTKAEYMERGPSI 414
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 50.0 bits (114), Expect = 8e-07
Identities = 22/43 (51%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Frame = -3
Query: 432 KIKIIAPPERKYSVWIGGSILASL--STFQQMWISKEEYDESG 310
KI+I APP RK+ V++GG++LA+L Q W+SK+EY+E G
Sbjct: 341 KIRIEAPPSRKHMVFLGGAVLANLMKDRDQDFWVSKKEYEEGG 383
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 34.7 bits (76), Expect = 0.034
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = -3
Query: 468 QKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEE 325
++E+ + P+TI ++ P R + ++G I+AS STF+ IS ++
Sbjct: 492 EQELSTVVPNTIHTQVNISPWRYNAAYLGAQIVASASTFEDSCISLQQ 539
>Z75545-1|CAB61025.1| 665|Caenorhabditis elegans Hypothetical
protein K10D3.2 protein.
Length = 665
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 448 RALDHQDQDHRSPREEVLRMDRW 380
R +D D + R EE++R DRW
Sbjct: 134 RFVDVNDNEIREANEEIIRKDRW 156
>AB000913-1|BAA21715.1| 665|Caenorhabditis elegans UNC-14 protein.
Length = 665
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 448 RALDHQDQDHRSPREEVLRMDRW 380
R +D D + R EE++R DRW
Sbjct: 134 RFVDVNDNEIREANEEIIRKDRW 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,759,847
Number of Sequences: 27780
Number of extensions: 158671
Number of successful extensions: 396
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -