Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30631
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              90   1e-20
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   0.94 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.8  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 90.2 bits (214), Expect = 1e-20
 Identities = 42/45 (93%), Positives = 44/45 (97%)
 Frame = -3

Query: 468 QKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 334
           QKEI ALAPST+KIKIIAPPE+KYSVWIGGSILASLSTFQQMWIS
Sbjct: 89  QKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +1

Query: 160 DGVRLDVQFSGITRYNVLTVAFRTRTSTTPHSTGVT--RPRCLEALAVDDAGAGLVVFL 330
           D  +LD  F   T+ N + ++ R++ STT    G T  +   + AL +D        FL
Sbjct: 354 DSAKLDKIFDIATKENAMLLSGRSQKSTTGPPPGPTPAQKARMRALNIDRVSRVFFPFL 412


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -2

Query: 415 SPREEVLRMDRWIHPGFPV 359
           +P  + + +  WIHP  P+
Sbjct: 531 NPLTDTVPIHTWIHPWLPL 549


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,533
Number of Sequences: 438
Number of extensions: 1980
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)