Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30631
(470 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 122 1e-28
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 122 1e-28
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 121 2e-28
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 120 7e-28
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 120 7e-28
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 120 7e-28
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 120 7e-28
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 120 7e-28
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 106 7e-24
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 105 1e-23
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 98 3e-21
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 79 2e-15
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 75 3e-14
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 60 1e-09
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 46 1e-05
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 43 9e-05
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 42 3e-04
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 30 0.91
At5g43500.2 68418.m05318 expressed protein 27 8.5
At5g43500.1 68418.m05319 expressed protein 27 8.5
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 122 bits (294), Expect = 1e-28
Identities = 54/61 (88%), Positives = 59/61 (96%)
Frame = -3
Query: 465 KEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKC 286
KEI ALAPS++KIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPGIVHRKC
Sbjct: 317 KEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDEAGPGIVHRKC 376
Query: 285 F 283
F
Sbjct: 377 F 377
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 122 bits (294), Expect = 1e-28
Identities = 54/61 (88%), Positives = 59/61 (96%)
Frame = -3
Query: 465 KEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKC 286
KEI ALAPS++KIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPGIVHRKC
Sbjct: 317 KEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDEAGPGIVHRKC 376
Query: 285 F 283
F
Sbjct: 377 F 377
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 121 bits (292), Expect = 2e-28
Identities = 54/61 (88%), Positives = 58/61 (95%)
Frame = -3
Query: 465 KEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKC 286
KEI ALAPS++KIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGP IVHRKC
Sbjct: 317 KEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKSEYDESGPSIVHRKC 376
Query: 285 F 283
F
Sbjct: 377 F 377
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 120 bits (288), Expect = 7e-28
Identities = 53/61 (86%), Positives = 58/61 (95%)
Frame = -3
Query: 465 KEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKC 286
KEI ALAPS++KIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGP IVHRKC
Sbjct: 317 KEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKC 376
Query: 285 F 283
F
Sbjct: 377 F 377
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 120 bits (288), Expect = 7e-28
Identities = 53/61 (86%), Positives = 58/61 (95%)
Frame = -3
Query: 465 KEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKC 286
KEI ALAPS++KIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGP IVHRKC
Sbjct: 317 KEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKC 376
Query: 285 F 283
F
Sbjct: 377 F 377
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 120 bits (288), Expect = 7e-28
Identities = 53/61 (86%), Positives = 58/61 (95%)
Frame = -3
Query: 465 KEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKC 286
KEI ALAPS++KIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGP IVHRKC
Sbjct: 317 KEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKC 376
Query: 285 F 283
F
Sbjct: 377 F 377
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 120 bits (288), Expect = 7e-28
Identities = 53/61 (86%), Positives = 58/61 (95%)
Frame = -3
Query: 465 KEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKC 286
KEI ALAPS++KIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGP IVHRKC
Sbjct: 317 KEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKC 376
Query: 285 F 283
F
Sbjct: 377 F 377
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 120 bits (288), Expect = 7e-28
Identities = 53/61 (86%), Positives = 58/61 (95%)
Frame = -3
Query: 465 KEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKC 286
KEI ALAPS++KIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGP IVHRKC
Sbjct: 317 KEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKC 376
Query: 285 F 283
F
Sbjct: 377 F 377
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 106 bits (255), Expect = 7e-24
Identities = 46/61 (75%), Positives = 55/61 (90%)
Frame = -3
Query: 465 KEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKC 286
KEI ALA + ++IKI+APPERKYSVWIGGSILASLST++QMWI+K EY+E+GP IVH KC
Sbjct: 269 KEINALAAANMRIKIVAPPERKYSVWIGGSILASLSTYEQMWITKAEYEENGPAIVHTKC 328
Query: 285 F 283
F
Sbjct: 329 F 329
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 105 bits (253), Expect = 1e-23
Identities = 46/61 (75%), Positives = 53/61 (86%)
Frame = -3
Query: 465 KEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKC 286
KEI ALAP ++KIK++APPERKYSVW+GGSILASLS+F MWI+K EYDE G IVHRKC
Sbjct: 318 KEINALAPPSMKIKVVAPPERKYSVWVGGSILASLSSFAPMWITKAEYDEQGGAIVHRKC 377
Query: 285 F 283
F
Sbjct: 378 F 378
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 97.9 bits (233), Expect = 3e-21
Identities = 41/60 (68%), Positives = 51/60 (85%)
Frame = -3
Query: 465 KEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKC 286
KE+ AL PS++K+K++ PPE + SVWIGGSILASLSTF QMWI+K+EY+E G IVHRKC
Sbjct: 306 KELNALVPSSMKVKVVVPPESECSVWIGGSILASLSTFHQMWITKDEYEEHGAAIVHRKC 365
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 78.6 bits (185), Expect = 2e-15
Identities = 36/45 (80%), Positives = 42/45 (93%)
Frame = -3
Query: 465 KEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 331
KEI ALAPS++KIK++APPERKYSVWIGGSILASLSTFQQ+ I +
Sbjct: 317 KEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVKIDQ 361
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 74.5 bits (175), Expect = 3e-14
Identities = 32/64 (50%), Positives = 46/64 (71%), Gaps = 3/64 (4%)
Frame = -3
Query: 468 QKEIXALAPSTIKIKIIAP---PERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIV 298
+K++ +P + ++K++A ER++SVWIGGSILASL +FQQMW SK EY+E G +
Sbjct: 377 EKDLIEESPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYI 436
Query: 297 HRKC 286
RKC
Sbjct: 437 QRKC 440
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 59.7 bits (138), Expect = 1e-09
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Frame = -3
Query: 468 QKEIXALAPSTIKIKIIAPPERK------YSVWIGGSILASLSTFQQMWISKEEYDESGP 307
QKE L S I+ ++ PPE YS W+GG+ILA + Q ++K +YDE+GP
Sbjct: 297 QKEAN-LCSSAIRPTLVKPPEYMPENLGMYSAWVGGAILAKVVFPQNQHVTKADYDETGP 355
Query: 306 GIVHRKCF 283
+VHRKCF
Sbjct: 356 SVVHRKCF 363
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 46.0 bits (104), Expect = 1e-05
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = -3
Query: 462 EIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 283
E+ L P +KI + VW GGS+LAS F+ M ++K EY+E G R+ F
Sbjct: 361 ELRPLVPDHFDVKITTQEDPILGVWRGGSLLASSPDFESMCVTKAEYEELGSARCRRRFF 420
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 43.2 bits (97), Expect = 9e-05
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = -3
Query: 435 IKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGI 301
+++ +++ P ++++VW GGS+L+S F +KEEY+E G I
Sbjct: 372 VEVNVVSHPVQRFAVWFGGSVLSSTPEFFASCRTKEEYEEYGASI 416
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 41.5 bits (93), Expect = 3e-04
Identities = 16/43 (37%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = -3
Query: 435 IKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 310
++++I PP RK+ V++GG++LA + + WI++E+Y E G
Sbjct: 337 LRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWINREDYMEEG 379
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 29.9 bits (64), Expect = 0.91
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Frame = -3
Query: 468 QKEIXALAPSTIK--IKIIAPPERKYSVWIGGSILASLSTFQQMW-ISKEEY 322
++E+ PS+I I++I PP + W G ++++LS F W I+++++
Sbjct: 412 ERELQDHLPSSISNGIRVIPPPYGVDTSWHGAKLISNLSIFPGPWCITRKQF 463
>At5g43500.2 68418.m05318 expressed protein
Length = 584
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 408 ERKYSVWIGGSILASLSTFQQMWISKEEYDESG 310
E ++ W GG+IL L ++ WI + ++ +G
Sbjct: 527 EPQFVTWKGGAILGILDFGREAWIERHQWMVNG 559
>At5g43500.1 68418.m05319 expressed protein
Length = 596
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 408 ERKYSVWIGGSILASLSTFQQMWISKEEYDESG 310
E ++ W GG+IL L ++ WI + ++ +G
Sbjct: 539 EPQFVTWKGGAILGILDFGREAWIERHQWMVNG 571
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,350,376
Number of Sequences: 28952
Number of extensions: 151981
Number of successful extensions: 399
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -