Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30629
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    30   0.35 
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    29   1.1  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    29   1.1  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    28   1.9  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    27   4.3  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    27   4.3  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    26   5.7  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    26   7.6  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    26   7.6  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    26   7.6  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    26   7.6  

>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 207 VVDYAKKKSYEDLLRQAQDSTTDDDLLRVSEEMFNADINNAFNYI 341
           ++DYA K     L      +  DDDL+++S  M   DI+ AFN I
Sbjct: 54  LIDYASKFEKVQLKSAVLKAPFDDDLMKIS-PMIKEDIDIAFNNI 97


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
            Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -1

Query: 272  GRRILCLAQQIFVALLLRI-VNDTTDNCAYLLESVLSCVPLLTSHMIADQVGKDVVEDLA 96
            G+ ++    + FV     +   D  +  AYLL+S+  C P +T H   D    D+ E  A
Sbjct: 795  GKHLVMAKTEPFVITATSMNTTDVDEVSAYLLKSIKFCDPNITPH-DGDASLCDISEGSA 853

Query: 95   RSLGYVISVTY 63
            R L  +I  ++
Sbjct: 854  RKLTSIIKYSF 864


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 21/90 (23%), Positives = 36/90 (40%)
 Frame = +3

Query: 258 QDSTTDDDLLRVSEEMFNADINNAFNYIQVNLQGKTTPMSRNDEAQSNLLNVPENVWSGP 437
           +  T   DLL+V +++   D +NA       ++     + R  +        PEN+    
Sbjct: 550 EQETIPSDLLKVRKDLL--DDSNAAKDTMDKVKKHLKSLLRVGDTARKEFTWPENMPKPC 607

Query: 438 TIRPFVALFDNYHKNVIRPEFVTPNEETEQ 527
            +   V     YH+ V+R  F+    E EQ
Sbjct: 608 EVMQQVVQLMKYHRAVMRENFIILGPEVEQ 637


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 660 KYARHWTGLCKCSCAFENVFMAELKSNEGLGLHSW 764
           KY ++W   CK +  F    M +LKS++ L +  W
Sbjct: 466 KYRKYWPDFCKAAGVF---CMGDLKSSDSLKVCDW 497


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 398 EFIKRS*EC-MERTNNKTFCCIIRQLSQECDQTRVCYAE*RNGTNH-LHQH 544
           E  K   +C  +R  + T CC IR ++ +CD          N T H +H+H
Sbjct: 28  ELNKNPKDCNSKRKRSVTECCEIRLITSKCDFESTQQLVHHNCTGHKVHEH 78


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
 Frame = +3

Query: 297 EEMFNADINNAFNYIQVNLQGKTTPMSRNDEAQSNLLNVPENVWSGPTI-RPFVALFDNY 473
           E+ F  D +   N I    Q +  P +     + + L  P +  +       F   F+N 
Sbjct: 178 EDDFEIDPDTDLNSILHRKQNRMDPKASFSSVEQSSLRTPSSAHNDDGFWDDFDIDFNNE 237

Query: 474 HKNVIRPEFVTPNEETEQTTYINTILATGP 563
            +++ R +  +PN   ++  YI++ ++  P
Sbjct: 238 TESIFRKKIRSPNTINQKHPYISSTISYQP 267


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 666 ARHWTGLCKCSCAFENVFMAELKSN 740
           A+ +  +CK +  F+NV+  ELK N
Sbjct: 67  AQDFVNVCKDASVFQNVYYYELKKN 91


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 655 SRSTHATGPAFANAVAPSRTCL 720
           S ST    P F N  AP+ TCL
Sbjct: 45  SNSTTVPPPPFVNTTAPNGTCL 66


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 675 WTGLCKCSCAFENVFM-AELKSNEGLGLHSWV 767
           WTGLC  S  F N F+ + + S E + +  W+
Sbjct: 329 WTGLCYES-GFANTFLISGIHSKEAISILKWI 359


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -1

Query: 653 PNLSQQLNLFGVLIQLSNAFVD*ESNEAPDGSRSKNSVDVSGLFRFF 513
           P+ S+    F  L  LSN     +S+    G +  NSV   GLF FF
Sbjct: 292 PSASETFRYF--LPMLSNGRDAKKSSSKSHGGKQNNSVAKDGLFDFF 336


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 255 AQDSTTDDDLLRVSEEMFNADI 320
           AQD   DDD+  + EE+F+ D+
Sbjct: 33  AQDDEPDDDIDALIEELFSEDV 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,527
Number of Sequences: 5004
Number of extensions: 68749
Number of successful extensions: 228
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)