Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30629
(833 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0672 + 27164628-27164792,27164903-27164965,27165298-271654... 72 5e-13
04_03_0826 + 20103105-20103697,20104222-20104391,20104487-201047... 31 0.86
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13... 31 1.1
07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874... 29 3.5
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 29 4.6
02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805 29 6.0
09_03_0127 + 12573429-12574857,12575269-12575903 28 8.0
09_03_0125 - 12531409-12531442,12531577-12531668,12531747-125323... 28 8.0
>04_04_0672 +
27164628-27164792,27164903-27164965,27165298-27165408,
27165454-27165537,27166081-27166194,27166901-27167494,
27167604-27167675,27167761-27167997
Length = 479
Score = 72.1 bits (169), Expect = 5e-13
Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Frame = +3
Query: 378 RNDEAQSNLLN-VPENVWSGPTIRPFVALFDNYHKNVIRPEFVTPNEETEQTTYINTILA 554
+ D A L + + ++V PT F AL DNY+ + E VT ++ E+ +I I
Sbjct: 252 KGDMASETLFSWLGDDVLRKPTYSRFCALLDNYNPHQGYKEVVTQQDKHEEVAFIEEIAR 311
Query: 555 TGPIRSLITFLVNKGITQLNEYPEQVELLRKIWFTKYARHWTGLCKCSCAFENVFMAELK 734
T PI+ L +LV KG+ +Y + +L +WF Y R G S AFE+VF+ E+K
Sbjct: 312 TAPIKYLHRYLVLKGVAS-QDYEDFKRMLTSLWFDLYGR--GGSSSSSSAFEHVFVGEIK 368
Query: 735 SNEGLG 752
G G
Sbjct: 369 GRRGQG 374
>04_03_0826 +
20103105-20103697,20104222-20104391,20104487-20104716,
20104825-20104933,20104967-20105154,20105818-20105919,
20106114-20106395,20106504-20106625,20106708-20107020,
20107096-20107329,20107477-20107767,20107975-20108286
Length = 981
Score = 31.5 bits (68), Expect = 0.86
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = -1
Query: 236 VALLLRIVNDTTDNCAYLLESVLSCVPLLTSHMIADQVGKDVVEDLARSLGYVISVTYPQ 57
+ L LR +T C Y LES+ + V L++ IAD+ D DL G + +
Sbjct: 470 ILLGLREKYETYHKCKYTLESINAAV-YLSARYIADRHLPDKAIDLIDEAGSRARMESFK 528
Query: 56 KNKENQCN 33
+ KE QC+
Sbjct: 529 RKKEEQCS 536
>03_01_0016 +
131141-131236,131743-132043,132125-132341,132440-132773,
132883-132996,133065-133193,133293-133469,133555-133746,
134844-134981,135327-135559,135900-136003,136633-136727,
136817-137053,137801-137922,138252-138354,138750-138826,
138909-139017,139107-139253,139953-140000,140292-140492,
140589-140738,140917-141002,141088-141193,141278-141373,
141759-141911,142647-142819,142923-142986,144056-144193,
144548-144595,144690-144836,144907-144968,146540-146645,
147357-147461,147548-147679,147765-147974,148070-148171,
148261-148398
Length = 1729
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 318 INNAFNYIQVNLQGKTTPMSRNDEAQSNLLNVPENVWSGPTIRPFV 455
+N A+N +Q +Q + P D +SN++N + T+R FV
Sbjct: 455 VNTAYNLLQYEVQSRVFPAILKDATKSNVVNYLWQINPSLTLRGFV 500
>07_03_0561 +
19485218-19485242,19485323-19486467,19487354-19487476,
19487553-19487626,19487886-19487946,19488285-19488370,
19488795-19488864,19489026-19489122,19489342-19489481,
19490225-19490308,19490313-19490346,19491833-19491951
Length = 685
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 92 CGPDLQQHPSQLDQQSCDWSAREHSSK 172
CGPD Q+ Q Q+S W +++ +SK
Sbjct: 320 CGPDAQRTEKQAKQESRKWGSKKGTSK 346
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 261 DSTTDDDLLRVSEEMFNADINNAFNYIQVNL 353
D T D L VS EM+ D NN +Y+Q +L
Sbjct: 673 DMLTIRDALEVSAEMYKKDPNNVQDYVQRHL 703
>02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805
Length = 456
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 624 EQVELLRKIWFTKYARHWTGLCKCSCAFENVFMAE 728
E++ L IW K+ H TGLC +N F+ E
Sbjct: 392 ERIYPLLMIWPPKFPAHLTGLCTLVYLVDNQFLLE 426
>09_03_0127 + 12573429-12574857,12575269-12575903
Length = 687
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 150 QQGNTAQNTFQQIGTVVGGVVDYAKKKSYEDLLR 251
Q+ TA +T + T + A+K +EDLLR
Sbjct: 356 QRSGTAASTVMTLNTAAAAAAEAARKLRFEDLLR 389
>09_03_0125 -
12531409-12531442,12531577-12531668,12531747-12532337,
12532454-12532789,12532899-12533156,12533867-12533971,
12534625-12534702,12535464-12535542,12535649-12535723,
12535828-12535946,12536042-12537106
Length = 943
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = -1
Query: 743 LVRFEFSHKHVLEGATAFAKAGPVACVLREPNLSQQLNLFGVLIQLSNAFVD*ESNEAPD 564
+VR+ + + + F K P+ CV EP+ ++FGV+ +S F + + +
Sbjct: 142 VVRWRLAEEGTPAPGSGFLKTIPLDCVDAEPDSGTHGHVFGVVRSVSVVFSVPRAGQKSN 201
Query: 563 GSRSKNSV 540
NSV
Sbjct: 202 AGGGDNSV 209
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,548,563
Number of Sequences: 37544
Number of extensions: 437466
Number of successful extensions: 1079
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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