Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30629
         (833 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31891| Best HMM Match : No HMM Matches (HMM E-Value=.)              86   4e-17
SB_31211| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_9542| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_23459| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0.17)           30   2.0  
SB_19356| Best HMM Match : Cucumo_2B (HMM E-Value=7.3)                 30   2.7  
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)                    29   4.6  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_31891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 85.8 bits (203), Expect = 4e-17
 Identities = 56/169 (33%), Positives = 81/169 (47%), Gaps = 4/169 (2%)
 Frame = +3

Query: 279 DLLRVSEEMFNADINNAFNYIQ--VNLQGKTTPMSRNDEAQSNLLN-VPENVWSGPTIRP 449
           +L  V ++M+ AD N     +   ++ QGKT   SR+D+A   L   V       PT   
Sbjct: 2   ELSHVCDQMWKADSNRLVPEVDYAIDPQGKTRFHSRSDQASDPLFTWVNPEALRKPTYDA 61

Query: 450 FVALFDNYHKNVIRPEFVTPNEETEQTTYINTILATGPIRSLITFLVNKGITQLNEYPEQ 629
           FV L DNY     +PE V   E  E   +I+ I  TGP+     FL  KG+   ++ P  
Sbjct: 62  FVKLLDNYASETGKPEVVNQEEINENRVFIDRIYDTGPMEIAHKFLAGKGLVP-SDRPGF 120

Query: 630 VELLRKIWFTKYARHWTGLCKCSCAFENVFMAELKSNEG-LGLHSWVVF 773
            + L ++WF  Y R      K S  FE+VF+ E +  E  +G H+W+ F
Sbjct: 121 KKKLYQMWFELYQRTRGCRVKDSSGFEHVFVGETRGKEEVIGFHNWIQF 169


>SB_31211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
 Frame = +3

Query: 297 EEMFNADINNAFNYIQVN--LQGKTTPMSRNDEAQSNLLN-VPENVWSGPTIRPFVALFD 467
           + +F ADIN  ++ +  N  LQ  T P  R+D A   L   V E      T     ALFD
Sbjct: 13  QRLFQADINRLYHGVDYNISLQNHTRPSMRDDVAPLPLFTWVNETRLKHTTFSSMEALFD 72

Query: 468 NYHKNVIRPEFVTPNEETEQTTYINTILATGPIRSLITFLVNK 596
           NY       E  +  E  E+  +I  ++AT  ++    +LV++
Sbjct: 73  NYFLYTGNKEHESKQEREEKKGFIEAVMATDVMKLTHNYLVHE 115


>SB_9542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 411 VPENVW--SGPTIRPFVALFDNYHKNVIRPEFVTPNEETEQTTYIN 542
           V  N W  S  T   F+ L DNY ++   PEF T  + T+Q+  +N
Sbjct: 28  VTVNTWDLSVKTSLGFIQLIDNYFQDPKGPEFPTKLKNTQQSVRVN 73


>SB_23459| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0.17)
          Length = 797

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +3

Query: 261 DSTTDDDLLRVSEEMFNADINNAFNYIQVNLQGKTTPMSRNDEAQSNLLNVPENVWSGPT 440
           +S  DD+L R +   +       F Y+QVNL        R D   +  +N+P    S   
Sbjct: 580 ESLRDDNLARSTAAAYQN--GTTFFYVQVNLHKTFVISKRTDSIINESVNLPRRSMSVDR 637

Query: 441 IR-PFVALFD 467
           +R PF   FD
Sbjct: 638 LRGPFRCKFD 647


>SB_19356| Best HMM Match : Cucumo_2B (HMM E-Value=7.3)
          Length = 194

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +3

Query: 456 ALFDNYHKNVIRPEFVTPNEETEQTTYINTILATGPIRSLITFLVNKGITQLNEYPEQV 632
           ALFDNY       E  +  E  E+  +I  ++AT  ++    +LV++ +   +  P  +
Sbjct: 12  ALFDNYFLYTGNKEHESKQEREEKKGFIEAVMATDVMKLTHNYLVHERLVPKSREPRDL 70


>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 2322

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
 Frame = +3

Query: 81   IAQAAGQIFNNILPNLI--SNHVTGQQGNTAQNTFQQIGT-VVGGVVDYAKKKSYEDLLR 251
            I  A+G+ F+  L +    +N + G    TAQ  F ++GT +VG      + + +ED + 
Sbjct: 1053 IKAASGKFFSRALDDAADSANRIEG----TAQKEFAEVGTDIVGVQKQMVELQKFEDDML 1108

Query: 252  QAQDSTTDDDLLRVSEE 302
            + +DS   DDL +  +E
Sbjct: 1109 KEEDSF--DDLQKKMDE 1123


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +3

Query: 57  LGVCHADDIAQAAGQIFNNILPNLISNHVTGQQGNTAQNTFQQIG-TVVGGVVDYAKKKS 233
           LGV   D++    G+   N+  +L   H   Q G T+  + + +G +  G VV+Y+  +S
Sbjct: 129 LGVLTYDELDNGQGRARLNLFRHL---HEI-QSGRTSSISHEILGFSCTGEVVNYSDGRS 184

Query: 234 YEDLLRQAQDSTTDDDL 284
            ED+  Q+    T  DL
Sbjct: 185 AEDVCEQSSKLITFIDL 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,152,965
Number of Sequences: 59808
Number of extensions: 520089
Number of successful extensions: 1346
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)