Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30629
         (833 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1 p...    32   0.54 
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p...    32   0.54 
At1g62950.1 68414.m07108 leucine-rich repeat transmembrane prote...    30   1.6  
At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative...    29   2.9  
At4g28480.1 68417.m04074 DNAJ heat shock family protein contains...    29   2.9  
At4g23950.1 68417.m03444 expressed protein ; expression supporte...    29   2.9  
At5g61480.1 68418.m07714 leucine-rich repeat transmembrane prote...    29   3.8  
At3g01290.1 68416.m00037 band 7 family protein similar to hypers...    29   3.8  
At4g14160.2 68417.m02186 transport protein, putative similar to ...    29   5.0  
At1g12460.1 68414.m01440 leucine-rich repeat transmembrane prote...    29   5.0  
At5g43935.1 68418.m05375 flavonol synthase, putative similar to ...    28   6.6  
At4g31560.1 68417.m04482 expressed protein                             28   6.6  
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1...    28   8.8  

>At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1
           protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
           domain; contains Pfam PF00400: WD domain, G-beta repeat
           (8 copies); identical to stomatal cytokinesis defective
           [Arabidopsis thaliana] GI:19743728; supporting cDNA
           gi|19743727|gb|AY082605.1|; PMID 12874123
          Length = 909

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 261 DSTTDDDLLRVSEEMFNADINNAFNYIQVNL 353
           D +T  D L VS EMF  D NN  +Y+Q +L
Sbjct: 633 DLSTVRDALEVSAEMFKKDANNVSDYVQRHL 663


>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
           protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
           domain; contains Pfam PF00400: WD domain, G-beta repeat
           (8 copies); identical to stomatal cytokinesis defective
           [Arabidopsis thaliana] GI:19743728; supporting cDNA
           gi|19743727|gb|AY082605.1|; PMID 12874123
          Length = 1187

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 261 DSTTDDDLLRVSEEMFNADINNAFNYIQVNL 353
           D +T  D L VS EMF  D NN  +Y+Q +L
Sbjct: 633 DLSTVRDALEVSAEMFKKDANNVSDYVQRHL 663


>At1g62950.1 68414.m07108 leucine-rich repeat transmembrane protein
           kinase, putative contains protein kinase domains
          Length = 890

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 240 DLLRQAQDSTTDDDLLRVSEEMFNADINNAFNYIQVNLQG 359
           ++L Q +D+  DD    ++  + NAD+ N+FN +  N +G
Sbjct: 34  EILLQFKDNINDDPYNSLASWVSNADLCNSFNGVSCNQEG 73


>At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 345

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 1/154 (0%)
 Frame = +3

Query: 90  AAGQIFNNILPNLISNHVTGQQGNTAQNTFQQIGTVVGGVVDYAKKKSYEDLLRQAQDST 269
           A GQ+       ++  +V G  G+T +    +         +Y ++      L++   + 
Sbjct: 167 AVGQLVGQFA-KMMGCYVVGSAGSTEKVDLLKTKFGFDDAFNYKEEPDLSAALKRCFPTG 225

Query: 270 TDDDLLRVSEEMFNADINNAFNYIQVNLQGKTTPMS-RNDEAQSNLLNVPENVWSGPTIR 446
            D     V  +M +A + N   + ++ + G  +  +  N E   NL N+   ++    I+
Sbjct: 226 IDIYFENVGGKMLDAVLLNMNPHGRIAVCGMISQYNLENQEGVHNLSNI---IYKRIRIQ 282

Query: 447 PFVALFDNYHKNVIRPEFVTPNEETEQTTYINTI 548
            F A+FD Y K     +FV P+ +  + TY+  +
Sbjct: 283 GF-AVFDFYEKYSKFLDFVLPHIKEGKITYVEDV 315


>At4g28480.1 68417.m04074 DNAJ heat shock family protein contains
           Pfam profile PF00226: DnaJ domain; ; similar to DnaJ
           homolog subfamily B member 1 (Heat shock 40 kDa protein
           1) (Heat shock protein 40) (HSP40) (DnaJ protein homolog
           1) (HDJ-1) (Swiss-Prot:P25685) [Homo sapiens] and
           (Swiss-Prot:Q9QYJ3) [Mus musculus]
          Length = 348

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +3

Query: 282 LLRVSEEMFNADINNAFNYIQVNLQGKTTPMSRND-EAQSNLLNVPENVWSGPTIRPFVA 458
           +L+V     + D+  A+  + +       P ++ D EA+   ++   +V S P  R   A
Sbjct: 8   VLQVDRSANDDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKR---A 64

Query: 459 LFDNYHKNVIRPEFVTPNEETEQTTYINT 545
           ++D Y +  ++     PN  T   +Y +T
Sbjct: 65  VYDQYGEEGLKGNVPPPNAATSGASYFST 93


>At4g23950.1 68417.m03444 expressed protein ; expression supported
           by MPSS
          Length = 466

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -1

Query: 230 LLLRIVNDTTDNCAYLLESVLSCVPLLTSHMIADQVGKDVVEDLARSLGYVISVTYPQKN 51
           +L++  N  + N   + + +L CVPL  S    D++G      ++++L    SV      
Sbjct: 1   MLIKETNLGSFNLGGIFQRLLYCVPLKKSIYFVDRIGNYTDGSVSKTLNSTSSVFPQATE 60

Query: 50  KEN 42
           KEN
Sbjct: 61  KEN 63


>At5g61480.1 68418.m07714 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 1041

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 321 NNAFNYIQVNLQGKTTPMSRNDEAQSNLLN--VPENVWSGPTIRPFVALFDN 470
           NN F   Q+     T P+ +     +N  +  +PEN+W  P ++ F A F N
Sbjct: 450 NNRFTD-QIPADFATAPVLQYLNLSTNFFHRKLPENIWKAPNLQIFSASFSN 500


>At3g01290.1 68416.m00037 band 7 family protein similar to
           hypersensitive-induced response protein [Zea mays]
           GI:7716470; contains Pfam profile PF01145: SPFH domain /
           Band 7 family
          Length = 285

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
 Frame = -1

Query: 221 RIVNDTTDNCAYLLESVLSCVPLLTSHMIADQ---VGKDVVEDLARSL---GYVISVT 66
           R+ N TT   AY+ + + +CVP L    + +Q   + K V E+L +++   GY I  T
Sbjct: 89  RLSNPTTQIKAYVFDVIRACVPKLNLDDVFEQKNEIAKSVEEELDKAMTAYGYEILQT 146


>At4g14160.2 68417.m02186 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 772

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 438 TIRPFVALFDNYHKNVIRPEFVTP-NEETEQTTYINTILATGPIRSLITFL 587
           T++P++ LF  +  N+ R +FV   N   ++T Y   +L    I + I  +
Sbjct: 579 TLKPYLTLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENISNAIVMI 629


>At1g12460.1 68414.m01440 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 882

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 231 SYEDLLRQAQDSTTDDDLLRVSEEMFNADINNAFNYIQVNLQG 359
           S  D+L Q + S +DD    ++  + + D+ N+FN I  N QG
Sbjct: 25  SERDILLQFKGSISDDPYNSLASWVSDGDLCNSFNGITCNPQG 67


>At5g43935.1 68418.m05375 flavonol synthase, putative similar to
           flavonol synthase from Arabidopsis thaliana [SP|Q96330],
           Matthiola incana [SP|O04395]; contains Pfam profile
           PF03171 2OG-Fe(II) oxygenase superfamily
          Length = 293

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/75 (24%), Positives = 32/75 (42%)
 Frame = -1

Query: 701 ATAFAKAGPVACVLREPNLSQQLNLFGVLIQLSNAFVD*ESNEAPDGSRSKNSVDVSGLF 522
           A A  KA     + +  N      L   L ++   F +  ++E    +R  +S D+ G F
Sbjct: 33  AHAVVKASEEWGIFQLVNHGIPAELMRRLQEVGRQFFELPASEKESVTRPADSQDIEGFF 92

Query: 521 RFFIRRNKLWSDHIL 477
               ++ K W DH++
Sbjct: 93  SKDPKKLKAWDDHLI 107


>At4g31560.1 68417.m04482 expressed protein
          Length = 137

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -1

Query: 260 LCLAQQIFVALLLRIVNDTTDN--CAYLLESVLSCVPLLTSHMIADQVGKDVVEDLA 96
           LCL ++I  + ++     +T +   A+ + + L    + TS  IAD++ +D +ED+A
Sbjct: 41  LCLTRRIRDSSVVTRAGPSTSSYLLAFAIPATLIAATVFTSIKIADKLDEDFLEDIA 97


>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
           putative / heat shock protein clpB, putative /
           HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
           [Phaseolus lunatus]
          Length = 968

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 75  DDIAQAAGQIFNNILPNLISNHVTGQQGNTAQNT 176
           D+I +A G +FN  L  L    VT  QG T   T
Sbjct: 757 DEIEKAHGDVFNVFLQILDDGRVTDSQGRTVSFT 790


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,464,299
Number of Sequences: 28952
Number of extensions: 356287
Number of successful extensions: 917
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)