Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30628
(704 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 31 1.2
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 30 1.6
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8) 29 2.8
SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18) 29 3.7
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06) 29 3.7
SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30) 29 4.9
SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_57834| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05) 28 6.4
SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23) 28 6.4
SB_3330| Best HMM Match : RBM1CTR (HMM E-Value=0.62) 28 6.4
SB_49967| Best HMM Match : RBM1CTR (HMM E-Value=1.4) 28 8.5
SB_46682| Best HMM Match : Fibrinogen_C (HMM E-Value=0.022) 28 8.5
>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 1021
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +1
Query: 100 YNRVYSTVSPFVYKPGR---YVADPGRYDPSRDNSGRYIP 210
YNR+ + P++ +PGR Y PGR DP GR P
Sbjct: 670 YNRLQARDDPYIKQPGRDDPYNKQPGRDDPYIKQPGRDDP 709
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 536 PKATTTCTRPRTRF--SLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLL 697
P ATTT T+P T + P + T P + ++ +T T T +PT LL
Sbjct: 139 PPATTTPTKPTTTTPPATTTPTKPTTTTPPATTTPTKSTTTTPPATTTPTTRPLLL 194
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 542 ATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TT 691
+TTT + P T + + + + T AP T R+ +T T AP+ S T +T
Sbjct: 75 STTTTSAPSTS-TPRTGSTTTTSAPSTSTPRTGSTTTTSAPSTSTTSNST 123
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 545 TTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TT 691
TT+ + P T + + + + T AP T R+ +T T AP+ S T +T
Sbjct: 15 TTSTSTPSTS-TPRAGSTTNTSAPSTSTPRTGSTTTTSAPSTSTTSNST 62
>SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8)
Length = 541
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +2
Query: 536 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAP 664
PK T TRP+TR + R +T PKTK S+S+ T T P
Sbjct: 270 PK-TRPKTRPKTRPKTRPKTRPKT-RPKTK-SKSKSKTKTATP 309
>SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)
Length = 516
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +1
Query: 430 SKVVTPTYVASKVVPPSGAGYDYKYGIIRYDNDVAPEGYHYLYETENKILAEEAGKVENV 609
+ ++ P V +K P G DY Y + D +A YH L E +E++
Sbjct: 183 ANIIAPISVVNKF--PPGTVVDYAYNVFYQDRKIAHTPYHALTVGERDCYNARRDMLEHL 240
Query: 610 G 612
G
Sbjct: 241 G 241
>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
Length = 425
Score = 29.1 bits (62), Expect = 3.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 456 NVCGCDHLAGNVCGCDWHGNGRL 388
N GC+ GN GC++ G+ R+
Sbjct: 382 NTMGCEFQGGNTMGCEFQGDSRI 404
>SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)
Length = 420
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 28 VFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKP 144
VFL +S+TV + + GKY P YN + ++ F + P
Sbjct: 132 VFLVWGISITVGVLSVVGKYEPLAYN--VTVIALFFFLP 168
>SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 278 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 367
PVL +P S PRR S +LTR PA
Sbjct: 111 PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 140
>SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -3
Query: 465 LAGNVCGCDHLAGNVCGCDWHGNGRLHDGQGNNAGSLVSITKV 337
L GN CG L GN CG +GN GN +G+ + V
Sbjct: 238 LYGNKCGTS-LYGNKCGTSLYGNKSGTSLYGNKSGNPPDVVAV 279
>SB_57834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 565 ENKILAEEAGKVENVGTENEGIKVKGFYEYVGPDGVTYRVDYTAD 699
EN L + GK + + + I G+YEY GP + RV AD
Sbjct: 154 ENSTLTQNCGKW-GISSSSVEINRWGYYEYTGPKRMYARVIVWAD 197
>SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)
Length = 304
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 278 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 367
PVL +P S PRR S +LTR PA
Sbjct: 86 PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 115
>SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)
Length = 877
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = -3
Query: 450 CG-CD---HLAGNVCGCDWHGNGRL-HDGQGN 370
CG CD AG V CDW G+G L D +GN
Sbjct: 667 CGPCDVAVDSAGRVIACDWSGDGVLVFDSRGN 698
>SB_3330| Best HMM Match : RBM1CTR (HMM E-Value=0.62)
Length = 546
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +2
Query: 548 TTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTV 670
T T R R+ + P RS L P+ +ASRSRD APT+
Sbjct: 262 TELTERRKRYFVS-PLRSSCLWPRGRASRSRD--GACAPTM 299
>SB_49967| Best HMM Match : RBM1CTR (HMM E-Value=1.4)
Length = 334
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/46 (41%), Positives = 24/46 (52%)
Frame = +2
Query: 545 TTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE 682
T + R ++RF P RS P +ASRSRD APT+ P E
Sbjct: 262 TESTERRKSRFV--SPLRSSCRWPLGRASRSRD--GACAPTMPPPE 303
>SB_46682| Best HMM Match : Fibrinogen_C (HMM E-Value=0.022)
Length = 395
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 556 YETENKILAEEAGKVENVGTENEGIKVKGFYEYVGPDGVTYRVDYTAD 699
+ ++N L + GK + + + I G+YEY GP + RV AD
Sbjct: 315 FTSKNSTLTQNCGKW-GISSSSVEINRWGYYEYTGPKRMYARVIVWAD 361
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.136 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,414,862
Number of Sequences: 59808
Number of extensions: 338535
Number of successful extensions: 882
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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