Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30628
(704 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026212-4|AAF99973.2| 386|Caenorhabditis elegans Hypothetical ... 33 0.20
Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical pr... 31 1.1
U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein. 31 1.1
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ... 29 2.4
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z48783-2|CAC42295.1| 805|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z48783-1|CAA88701.1| 780|Caenorhabditis elegans Hypothetical pr... 28 7.5
AF233652-1|AAF63475.1| 780|Caenorhabditis elegans RFX-type tran... 28 7.5
AF226156-1|AAF61564.1| 805|Caenorhabditis elegans RFX-like tran... 28 7.5
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 27 9.9
L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell m... 27 9.9
L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell m... 27 9.9
L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell m... 27 9.9
>AF026212-4|AAF99973.2| 386|Caenorhabditis elegans Hypothetical
protein F52G3.5 protein.
Length = 386
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 545 TTTCTRPRTRFSL-KKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TT 691
TTT P T KK ++R+ PKT + + +T T APT + E TT
Sbjct: 195 TTTTEEPSTTSEYRKKSKKNRSKRPKTTKTTTTSTTTTEAPTTTTEEYTT 244
>Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical
protein E02H4.1 protein.
Length = 664
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -3
Query: 150 AAWLIDEWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTHFRCYEA 4
+AW D + +N + E + LS+ Q+HC+ CQ+D + Y A
Sbjct: 501 SAWC-DSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQYTTTYSA 548
>U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein.
Length = 664
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -3
Query: 150 AAWLIDEWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTHFRCYEA 4
+AW D + +N + E + LS+ Q+HC+ CQ+D + Y A
Sbjct: 501 SAWC-DSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQYTTTYSA 548
>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
protein Y51B11A.1 protein.
Length = 1079
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 536 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 700
P TTT T P T + +P S T +T + + ++T+T AP+ S T T T
Sbjct: 118 PVQTTTTTAPET--TSTEPPSSSTSPVQTTTTTAPETTSTEAPSSSTTPVQTTTT 170
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 536 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 700
P TTT T P T + +P S T +T + + ++T+T +P+ S T T T
Sbjct: 210 PVQTTTTTAPET--TSTEPPSSSTTPVQTTTTTAPETTSTESPSSSTTPVQTTTT 262
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 536 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 700
P TTT T P T + +P S T +T + + ++T+T +P+ S T T T
Sbjct: 486 PVQTTTITAPET--TSTEPPSSSTTPVQTTTTTAPETTSTESPSSSTTPVQTTTT 538
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 536 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 700
P TTT T P T + +P S T +T + + ++T+T P+ S T T T
Sbjct: 187 PVQTTTTTAPET--TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTT 239
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 536 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 700
P TTT T P T + +P S T +T + + ++T+T P+ S T T T
Sbjct: 302 PVQTTTITAPET--TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTT 354
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 536 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 700
P TTT T P T + +P S T +T + + ++T+T P+ S T T T
Sbjct: 417 PVQTTTITAPET--TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTT 469
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 536 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 700
P TTT T P T + +P S T +T + + ++T+T P+ S T T T
Sbjct: 532 PVQTTTTTAPET--TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTT 584
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 536 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 700
P TTT T P T + +P S T +T + + ++T+T P+ S T T T
Sbjct: 555 PVQTTTTTAPET--TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTT 607
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 536 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 700
P TTT T P T + +P S T +T + + ++T+T P+ S T T T
Sbjct: 578 PVQTTTTTAPET--TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTT 630
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 536 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 700
P TTT T P T + +P S T +T + + ++T+T P+ S T T T
Sbjct: 601 PVQTTTTTAPET--TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTT 653
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 536 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 700
P TTT T P T + +P S T +T + + ++T+T P+ S T T T
Sbjct: 624 PVQTTTTTAPET--TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTT 676
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 536 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 700
P TTT T P T + +P S T +T + + ++T+T P+ S T T T
Sbjct: 164 PVQTTTTTAPET--TSTEPPSSSTSPVQTTTTTAPETTSTEPPSSSTTPVQTTTT 216
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 536 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 700
P TTT T P T + +P S T +T + + ++T+T P+ S T T T
Sbjct: 647 PVQTTTTTAPET--TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSNTPVQTTTT 699
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 536 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 700
P TTT T P T + +P S T +T + + ++T+T P+ S T T T
Sbjct: 739 PVQTTTITAPET--TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSNTPVQTTTT 791
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 539 KATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPT 679
+ TTT +P T S KK + T P K S+ +T T +P V T
Sbjct: 375 QVTTTTKKPSTTTSTKKLTTTTTTTP--KPSQKPTTTTTKSPVVITT 419
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 545 TTTCTRPRTRFSLKKPARSRTLAPKTKA-SRSRDSTNTLAPTVSPTE*TTLLT 700
TTT T T + + T P T + ++ +T T PT +PT TT T
Sbjct: 236 TTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTTTPTTTPTTTTTPTT 288
>Z48783-2|CAC42295.1| 805|Caenorhabditis elegans Hypothetical
protein F33H1.1b protein.
Length = 805
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 475 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 570
P+G ++ Y I Y N V P G + LY ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209
>Z48783-1|CAA88701.1| 780|Caenorhabditis elegans Hypothetical
protein F33H1.1a protein.
Length = 780
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 475 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 570
P+G ++ Y I Y N V P G + LY ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184
>AF233652-1|AAF63475.1| 780|Caenorhabditis elegans RFX-type
transcription factor DAF-19 short variant protein.
Length = 780
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 475 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 570
P+G ++ Y I Y N V P G + LY ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184
>AF226156-1|AAF61564.1| 805|Caenorhabditis elegans RFX-like
transcription factor DAF-19 protein.
Length = 805
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 475 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 570
P+G ++ Y I Y N V P G + LY ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 536 PKATTTCTRPRTRFSLKKPARSRTLAPKTKA-SRSRDSTNTLAPTVSPTE*TT 691
P TTT T P T S + + ++ T S + +T+T PT + T TT
Sbjct: 265 PTTTTTTTIPSTTSSTTSTSTTTSVVTTTTVTSTTEPTTSTSTPTTTTTMQTT 317
>L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell
migration protein10, isoform b protein.
Length = 650
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 66 GRRNWKVHSFPVQPSLLY 119
GR++WK H F ++PS LY
Sbjct: 340 GRKSWKKHYFVLRPSGLY 357
>L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell
migration protein10, isoform a protein.
Length = 667
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 66 GRRNWKVHSFPVQPSLLY 119
GR++WK H F ++PS LY
Sbjct: 357 GRKSWKKHYFVLRPSGLY 374
>L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell
migration protein10, isoform c protein.
Length = 779
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 66 GRRNWKVHSFPVQPSLLY 119
GR++WK H F ++PS LY
Sbjct: 469 GRKSWKKHYFVLRPSGLY 486
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.314 0.136 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,149,591
Number of Sequences: 27780
Number of extensions: 238817
Number of successful extensions: 764
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -