Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30627
(774 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36860.1 68417.m05226 LIM domain-containing protein low simil... 41 8e-04
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 40 0.001
At5g66610.1 68418.m08396 LIM domain-containing protein contains ... 38 0.006
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 36 0.023
At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 36 0.030
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 35 0.052
At4g16015.1 68417.m02430 DC1 domain-containing protein contains ... 34 0.12
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 34 0.12
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 33 0.21
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 32 0.49
At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger) fa... 32 0.49
At1g14680.1 68414.m01746 hypothetical protein 31 1.1
At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 30 2.0
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 29 3.4
At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger) fa... 28 6.0
At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa... 28 7.9
At1g36050.1 68414.m04479 expressed protein 28 7.9
At1g22200.1 68414.m02776 expressed protein 28 7.9
>At4g36860.1 68417.m05226 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 351
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +3
Query: 435 WHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQFASRCDGCGEVFRAGTKKM-EYKT 611
WH CF C C ++D +F ++ Y CY Q +CD C + EY+
Sbjct: 5 WHPECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQHHPKCDVCHNFIPTNPAGLIEYRA 64
Query: 612 RQWHEKCFC 638
+ + +C
Sbjct: 65 HPFWMQKYC 73
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +3
Query: 252 WHSGHFCCWQCDESLTGQRYVLRDEHPYCIKCYESVFANGCEECNKII 395
WH FCC CD+ + + + PY CY+ C+ C+ I
Sbjct: 5 WHPECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQHHPKCDVCHNFI 52
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = +3
Query: 372 CEECNKIIGIDSKDLSYKDKHWHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQFAS 551
C CN IG + L+ + WH CF C C + + +F + + + CY ++
Sbjct: 172 CAGCNMEIG-HGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHP 230
Query: 552 RCDGCGEVFRAG-TKKMEYKTRQWHEKCFC 638
+CD C +EY+ + + +C
Sbjct: 231 KCDVCSHFIPTNHAGLIEYRAHPFWVQKYC 260
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 11/93 (11%)
Frame = +3
Query: 222 GEYTKAMNKDWHSGHFCCWQCDESLTGQRYVLRDEHPYCIKCYESVFANGCEECNKIIGI 401
G + +N WH F C+ C + ++ + +P+ CY + C+ C+ I
Sbjct: 182 GRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHPKCDVCSHFIPT 241
Query: 402 DSKDL-----------SYKDKHWHEACFLCAKC 467
+ L Y H H+A C C
Sbjct: 242 NHAGLIEYRAHPFWVQKYCPSHEHDATPRCCSC 274
>At5g66610.1 68418.m08396 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 529
Score = 38.3 bits (85), Expect = 0.006
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Frame = +3
Query: 222 GEYTKAMNKDWHSGHFCCWQCDESLTGQRYVLRDEHPYCIKCY----ESVFANGCEECNK 389
G A+ +WH FCC CD+ + Y EHP+ + Y E C C +
Sbjct: 211 GRSVHALGVNWHPECFCCRYCDKPIAMHEY---KEHPFWKEKYCPFHEVDGTPKCCSCER 267
Query: 390 IIGIDSKDLSYKDKHWHEACFLCAKCRV 473
+ +K + D W C C +C V
Sbjct: 268 LEPWGTKYVMLADNRW--LCVKCMECAV 293
Score = 31.5 bits (68), Expect = 0.64
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 549 SRCDGCGEVFRAGTKKMEYKTRQWHEKCFCLRCLQEP 659
S CDGC G + + WH +CFC R +P
Sbjct: 199 SICDGCKSAIEYG-RSVHALGVNWHPECFCCRYCDKP 234
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 36.3 bits (80), Expect = 0.023
Identities = 20/89 (22%), Positives = 35/89 (39%)
Frame = +3
Query: 372 CEECNKIIGIDSKDLSYKDKHWHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQFAS 551
C++C I D ++ WH CF C +CR + + S L +Y CY
Sbjct: 1240 CKDCKSAIE-DGISINAYGSVWHPQCFCCLRCREPIAMNEI-SDLRGMYHKPCYKELRHP 1297
Query: 552 RCDGCGEVFRAGTKKMEYKTRQWHEKCFC 638
C C + + ++Y + + +C
Sbjct: 1298 NCYVCEKKIPRTAEGLKYHEHPFWMETYC 1326
Score = 31.1 bits (67), Expect = 0.85
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Frame = +3
Query: 216 DGGEYTKAMNKDWHSGHFCCWQCDESLTGQRYVLRDEHPYCIKCYESVFANGCEECNKII 395
+ G A WH FCC +C E + + Y CY+ + C C K I
Sbjct: 1248 EDGISINAYGSVWHPQCFCCLRCREPI-AMNEISDLRGMYHKPCYKELRHPNCYVCEKKI 1306
Query: 396 GIDSKDLSYKD-KHWHE 443
++ L Y + W E
Sbjct: 1307 PRTAEGLKYHEHPFWME 1323
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 549 SRCDGCGEVFRAGTKKMEYKTRQWHEKCF-CLRCLQEP 659
S+C C G Y + WH +CF CLRC +EP
Sbjct: 1238 SKCKDCKSAIEDGISINAYGS-VWHPQCFCCLRC-REP 1273
>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
similarity to transcription factor Ntlim1 [Nicotiana
tabacum] GI:5689136, LIM domain protein WLIM-1
[Helianthus annuus] GI:5070280; contains Pfam profile
PF00412: LIM domain
Length = 190
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +3
Query: 372 CEECNKIIGIDSKDLSYKDKHWHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQF 545
C C+K + + K L+ ++ +H+ACF C C+ +L + S +YC +D F
Sbjct: 10 CMACDKTVYLVDK-LTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQNF 66
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 35.1 bits (77), Expect = 0.052
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +3
Query: 372 CEECNKIIGIDSKDLSYKDKHWHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQF 545
C+ C+K + + L+ + +H++CF C C+ +LV + S +YC ++ F
Sbjct: 10 CKACDKTVYVMDL-LTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKPHFEQLF 66
Score = 26.6 bits (56), Expect(2) = 0.69
Identities = 11/50 (22%), Positives = 21/50 (42%)
Frame = +3
Query: 372 CEECNKIIGIDSKDLSYKDKHWHEACFLCAKCRVSLVDKQFGSKLDKIYC 521
C C K + + ++ + + +H+ CF C L + S +YC
Sbjct: 106 CATCKKTV-YPLEKVTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYC 154
Score = 23.4 bits (48), Expect(2) = 0.69
Identities = 11/37 (29%), Positives = 15/37 (40%)
Frame = +3
Query: 252 WHSGHFCCWQCDESLTGQRYVLRDEHPYCIKCYESVF 362
+H F C C +L Y D YC +E +F
Sbjct: 30 YHKSCFRCTHCKGTLVISNYSSMDGVLYCKPHFEQLF 66
>At4g16015.1 68417.m02430 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 535
Score = 33.9 bits (74), Expect = 0.12
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Frame = +3
Query: 309 YVLRD-EHPYCIKCYE-SVFANGCEECNKIIGIDSKDLSYKDKHWHEACFLCAKCRVSLV 482
Y+ R E +CI C + + CEEC+ I+ I +L KH ++ L + C
Sbjct: 373 YISRSTEEKFCIACGDKATMVLSCEECDFILDIKCSNLPKMVKHKNDKDHLLSLC----- 427
Query: 483 DKQFGSKLDKIY-CGNCYDAQFASR----CDGCGEVF 578
+G K + Y C C +A A + CD C F
Sbjct: 428 ---YGEKTSEQYWCEICEEALNAKKWFYSCDDCDITF 461
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +3
Query: 372 CEECNKIIGIDSKDLSYKDKHWHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQF 545
C C+K + + LS + +H++CF C C+ +L + S +YC ++ F
Sbjct: 10 CNVCDKTVYVVDM-LSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTHFEQLF 66
Score = 28.7 bits (61), Expect(2) = 0.19
Identities = 13/61 (21%), Positives = 27/61 (44%)
Frame = +3
Query: 372 CEECNKIIGIDSKDLSYKDKHWHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQFAS 551
C C K + + + + + +H+ CF CA +L + S +YC + ++ F
Sbjct: 104 CAACEKTV-YPLEKIQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFME 162
Query: 552 R 554
+
Sbjct: 163 K 163
Score = 23.4 bits (48), Expect(2) = 0.19
Identities = 11/37 (29%), Positives = 15/37 (40%)
Frame = +3
Query: 252 WHSGHFCCWQCDESLTGQRYVLRDEHPYCIKCYESVF 362
+H F C C +L Y D YC +E +F
Sbjct: 30 YHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTHFEQLF 66
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = +3
Query: 372 CEECNKIIGIDSKDLSYKDKHWHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQF 545
C+ C+K + + ++ + +H++CF C+ C +LV + S +YC ++ F
Sbjct: 11 CKACDKTVYVMDL-MTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTHFEQLF 67
Score = 27.1 bits (57), Expect(2) = 0.91
Identities = 11/50 (22%), Positives = 22/50 (44%)
Frame = +3
Query: 372 CEECNKIIGIDSKDLSYKDKHWHEACFLCAKCRVSLVDKQFGSKLDKIYC 521
C C K + + ++ + + +H+ CF CA L + + +YC
Sbjct: 107 CAACKKTV-YPLEKMTMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYC 155
Score = 22.6 bits (46), Expect(2) = 0.91
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +3
Query: 252 WHSGHFCCWQCDESLTGQRYVLRDEHPYCIKCYESVF 362
+H F C C+ +L Y D YC +E +F
Sbjct: 31 YHKSCFRCSHCNGTLVICNYSSMDGVLYCKTHFEQLF 67
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +3
Query: 372 CEECNKIIGIDSKDLSYKDKHWHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQF 545
C C K + + LS +H+ACF C+ C+ L + S +YC ++ F
Sbjct: 10 CRACEKTV-YPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHFEQLF 66
>At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger); weak similarity to
interaptin (GI:3549261) [Dictyostelium discoideum] weak
similarity to Axoneme-associated protein mst101(2)
(Swiss-Prot:Q08696) [Drosophila hydei]
Length = 711
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 399 IDSKDLSYKDK-HWHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQFASRCDG 563
ID + SY ++ ++ C +C K VS+V F ++ CG+C D+ FAS G
Sbjct: 636 IDKLEGSYDNEANYDRECIICMKDEVSVV---FLPCAHQVVCGSCSDSFFASNNGG 688
>At1g14680.1 68414.m01746 hypothetical protein
Length = 290
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +3
Query: 378 ECNKIIGIDSKDLSYKDKHWHEACFLCAKCRVSLVDKQFGSKLDK 512
E N+ +G + +DL + K W + CFL + R SL+ +FG++ D+
Sbjct: 79 EENQKLGSEREDLVNQCKKWEKECFLYHQDRESLM--EFGNETDE 121
>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 199
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +3
Query: 372 CEECNKIIGIDSKDLSYKDKHWHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQF 545
C+ C K + + LS +H++CF C C+ L + S +YC ++ F
Sbjct: 10 CKACEKTV-YAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQLF 66
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +3
Query: 252 WHSGHFCCWQCDESLT---GQRYVLRDEHPYCIKCYESVFANGCEE 380
WH G FCC CD+ + + +V + CYE + C+E
Sbjct: 367 WHPGCFCCRSCDKPIAIHELENHVSNSRGKFHKSCYER-YCYVCKE 411
>At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 278
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +3
Query: 417 SYKDKHWHEACFLCAKCRVSLVDKQFGSKLDKIYCGNC--YDAQFASRCDGC 566
SY D +H+ CF C K + +V + + + C C + DGC
Sbjct: 33 SYLDTCFHKFCFNCIKQWIKVVSSKASKQRSSVTCPLCKTENLSIIHNYDGC 84
>At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 480
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Frame = +1
Query: 637 ACVVCKNPIGTKSFIPREQEIYCAGCYEDKF----ATRCVKCN 753
AC +C NP + I +C C +KF C CN
Sbjct: 15 ACPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCN 57
>At1g36050.1 68414.m04479 expressed protein
Length = 386
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 507 DKIYCGNCYDAQFASR--CDGCGEVFRAGTKK 596
++ YCG+CY A+ C+ C +V A KK
Sbjct: 142 NETYCGSCYGAEAEEHDCCNSCEDVREAYRKK 173
>At1g22200.1 68414.m02776 expressed protein
Length = 386
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = +3
Query: 486 KQFGSKLD--KIYCGNCYDAQFA--SRCDGCGEVFRAGTKK 596
++ G +L+ + YCG+C+ A+ + + C+ C EV A KK
Sbjct: 133 QKHGGRLEHNETYCGSCFGAEASDDACCNSCEEVREAYRKK 173
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,549,927
Number of Sequences: 28952
Number of extensions: 250725
Number of successful extensions: 890
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -