Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30626
         (723 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    31   0.012
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   1.9  
AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochr...    23   1.9  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   7.6  

>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 30.7 bits (66), Expect = 0.012
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 496 KEFVRPVHDAHVHDEFERFKVKHQRQY-ASDLEHEKRLNIFRQSL 627
           K F +   +A V  E  R  ++  R Y ASDLE E RL  FR+ L
Sbjct: 157 KVFAKAREEATVVPEGSRTPIEIPRDYTASDLEEEHRLAYFREDL 201


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = +3

Query: 66  GHNGNRDEQGDVPASQFDARSAPRHPISATGH 161
           GH       G+ P     +   P HP+S + H
Sbjct: 53  GHGSLLSPSGNTPNKSSTSPYPPNHPLSGSKH 84


>AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 125

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 680 FTDMVKPRFARLFECMYLSDCLK 612
           F+D  KP +  L E  Y+  C+K
Sbjct: 30  FSDDTKPDYKSLQELKYMERCIK 52


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +1

Query: 430 SNMQCTGFPGPGSRHFATFNPMKEFVRPVHDAHV 531
           S+MQ    P P + H A  +P        HD  V
Sbjct: 112 SHMQFMQLPHPAAAHSALLSPAMPHNLTRHDGSV 145


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.132    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,205
Number of Sequences: 336
Number of extensions: 3347
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)