Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30626
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    29   0.89 
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    26   4.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   4.7  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    26   4.7  
SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces...    25   8.3  

>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 124  DQLQDIQSVLPDMTDFKYIGTETMQDADTAKWQMVQPVGDKLNKYTMWVKYKKT 285
            +++  I S+L + +   Y   + + +AD A+    QP GD L    +W ++  T
Sbjct: 857  EEVLSIVSMLGEASSLFYRPKDKIMEADKARANFTQPGGDHLTLLHIWNEWVDT 910


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
 Frame = +1

Query: 463 GSRHFATFNPMKEFVRPVHDAHVHDEFERFKVKHQRQYASDLEHEKRLNIFRQSLRYIHS 642
           G +     + ++  +    D++   E E    K +++   + EHEK +   ++ L+ +HS
Sbjct: 201 GRKDIVKLSELRNCINSSKDSNQIQELENLLRKEKQR---NTEHEKIIRRMKKELKELHS 257

Query: 643 N-NRANRGF--TMSVNH-LADRTDDE 708
             N A + F   +S N  + D+ +DE
Sbjct: 258 QFNFAKKLFISALSANQDILDKMNDE 283


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 278  LYLTHIVYLFSLSPTGCT 225
            +Y  H+VY+ SLSP  C+
Sbjct: 1399 VYAAHLVYILSLSPDVCS 1416


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 481 TFNPMKEFVRPVHDAHVHDEFERFKVKHQRQYASDLEHEKRL 606
           TF  +  FV P        ++ + K+K  ++  S  +  KRL
Sbjct: 263 TFGTLVSFVEPTITGSEQSDYRQIKIKKSKKKKSKSDRRKRL 304


>SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 114

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 94  ETCLQVNSTQDQLQDIQSVLPDMTDFKYIG-TETMQDADTAK 216
           ET LQ N+T   L +++ V PD   +K IG T   Q  + AK
Sbjct: 26  ETQLQENTTV--LNELEKVAPDSNIYKQIGPTLVKQSHEEAK 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.132    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,811
Number of Sequences: 5004
Number of extensions: 55181
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)