Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30626
(723 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11320.1 68417.m01828 cysteine proteinase, putative contains ... 49 4e-06
At4g11310.1 68417.m01827 cysteine proteinase, putative contains ... 47 1e-05
At3g48340.1 68416.m05276 cysteine proteinase, putative similar t... 44 8e-05
At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol pro... 43 2e-04
At3g48350.1 68416.m05277 cysteine proteinase, putative similar t... 42 4e-04
At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p... 42 4e-04
At4g16190.1 68417.m02457 cysteine proteinase, putative contains ... 41 7e-04
At5g50260.1 68418.m06224 cysteine proteinase, putative similar t... 40 0.001
At4g39090.1 68417.m05535 cysteine proteinase RD19a (RD19A) / thi... 39 0.003
At3g19400.2 68416.m02460 cysteine proteinase, putative non-conse... 39 0.003
At3g19400.1 68416.m02461 cysteine proteinase, putative non-conse... 39 0.003
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 38 0.007
At3g43960.1 68416.m04706 cysteine proteinase, putative contains ... 38 0.009
At4g23520.1 68417.m03390 cysteine proteinase, putative contains ... 37 0.012
At3g53090.1 68416.m05851 HECT-domain-containing protein / ubiqui... 35 0.047
At4g36880.1 68417.m05229 cysteine proteinase, putative strong si... 34 0.11
At3g13980.1 68416.m01765 expressed protein 30 1.4
At2g47470.2 68415.m05924 thioredoxin family protein similar to p... 29 2.4
At2g47470.1 68415.m05925 thioredoxin family protein similar to p... 29 2.4
At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing ... 29 4.1
At2g26380.1 68415.m03166 disease resistance protein-related / LR... 29 4.1
At1g33590.1 68414.m04158 disease resistance protein-related / LR... 29 4.1
At1g66200.1 68414.m07514 glutamine synthetase, putative similar ... 28 5.5
At3g08680.2 68416.m01009 leucine-rich repeat transmembrane prote... 28 7.2
At3g08680.1 68416.m01008 leucine-rich repeat transmembrane prote... 28 7.2
At1g09620.1 68414.m01079 tRNA synthetase class I (I, L, M and V)... 28 7.2
At5g58850.1 68418.m07374 myb family transcription factor (MYB119... 27 9.5
At5g44530.1 68418.m05455 subtilase family protein contains Pfam ... 27 9.5
At1g62340.1 68414.m07034 subtilisin-like serine protease / abnor... 27 9.5
>At4g11320.1 68417.m01828 cysteine proteinase, putative contains
similarity to cysteine proteinase RD21A (thiol protease)
GI:435619, SP:P43297 from [Arabidopsis thaliana]
Length = 371
Score = 48.8 bits (111), Expect = 4e-06
Identities = 26/74 (35%), Positives = 38/74 (51%)
Frame = +1
Query: 472 HFATFNPMKEFVRPVHDAHVHDEFERFKVKHQRQYASDLEHEKRLNIFRQSLRYIHSNNR 651
H T P + + + DA FE + VKH + Y S E E+RL IF +LR+I + N
Sbjct: 35 HHVTAGPGRR--QGIFDAEATLMFESWMVKHGKVYDSVAEKERRLTIFEDNLRFITNRNA 92
Query: 652 ANRGFTMSVNHLAD 693
N + + +N AD
Sbjct: 93 ENLSYRLGLNRFAD 106
>At4g11310.1 68417.m01827 cysteine proteinase, putative contains
similarity to cysteine proteinase RD21A (thiol protease)
GI:435619, SP:P43297 from [Arabidopsis thaliana]
Length = 364
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/60 (38%), Positives = 33/60 (55%)
Frame = +1
Query: 514 VHDAHVHDEFERFKVKHQRQYASDLEHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHLAD 693
V DA FE + VKH + Y S E E+RL IF +LR+I++ N N + + + AD
Sbjct: 40 VFDAEASLIFESWMVKHGKVYGSVAEKERRLTIFEDNLRFINNRNAENLSYRLGLTGFAD 99
>At3g48340.1 68416.m05276 cysteine proteinase, putative similar to
cysteine endopeptidase precursor [Ricinus communis]
GI:2944446; contains Pfam profile PF00112: Papain family
cysteine protease
Length = 351
Score = 44.4 bits (100), Expect = 8e-05
Identities = 18/56 (32%), Positives = 35/56 (62%)
Frame = +1
Query: 541 FERFKVKHQRQYASDLEHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHLADRTDDE 708
++R++ H + + E EKR N+FR ++ ++H+ N+ NR + + +N AD T +E
Sbjct: 38 YDRWRSHHSVPRSLN-EREKRFNVFRHNVMHVHNTNKKNRSYKLKLNKFADLTINE 92
>At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol
protease identical to SP|P43297 Cysteine proteinase
RD21A precursor (EC 3.4.22.-) {Arabidopsis thaliana},
thiol protease RD21A SP:P43297 from [Arabidopsis
thaliana]
Length = 462
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = +1
Query: 520 DAHVHDEFERFKVKHQRQYASD--LEHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHLAD 693
+A V +E + VKH + + + +E ++R IF+ +LR++ +N N + + + AD
Sbjct: 43 EAEVMSIYEAWLVKHGKAQSQNSLVEKDRRFEIFKDNLRFVDEHNEKNLSYRLGLTRFAD 102
Query: 694 RTDDE 708
T+DE
Sbjct: 103 LTNDE 107
>At3g48350.1 68416.m05277 cysteine proteinase, putative similar to
cysteine endopeptidase precursor [Ricinus communis]
GI:2944446; contains Pfam profile PF00112: Papain family
cysteine protease
Length = 364
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +1
Query: 541 FERFKVKHQRQYASDLEHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHLADRTDDE 708
+ER++ H AS E KR N+FR ++ ++H N+ N+ + + +N AD T E
Sbjct: 38 YERWRGHHSVSRASH-EAIKRFNVFRHNVLHVHRTNKKNKPYKLKINRFADITHHE 92
>At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol
protease, putative contains similarity to cysteine
proteinase RD21A (thiol protease) GI:435619, SP:P43297
from [Arabidopsis thaliana]
Length = 452
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +1
Query: 517 HDAHVHDEFERFKVKHQRQYASDLEHEKRLNIFRQSLRYIHSNNR-ANRGFTMSVNHLAD 693
++A +ER+ V++++ Y E E+R IF+ +L+++ ++ NR + + + AD
Sbjct: 35 NEAEARRMYERWLVENRKNYNGLGEKERRFEIFKDNLKFVEEHSSIPNRTYEVGLTRFAD 94
Query: 694 RTDDELAAL 720
T+DE A+
Sbjct: 95 LTNDEFRAI 103
>At4g16190.1 68417.m02457 cysteine proteinase, putative contains
similarity to papain-like cysteine proteinase isoform I
GI:7381219 from [Ipomoea batatas]
Length = 373
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +1
Query: 487 NPMKEFVRPVHDAHV---HDEFERFKVKHQRQYASDLEHEKRLNIFRQSLRYIHSNNRAN 657
NP+++ V +D + F FK K+++ YA+ +EH+ R +F+ +LR N +
Sbjct: 34 NPIRQVVPEENDEQLLNAEHHFTLFKSKYEKTYATQVEHDHRFRVFKANLRRARRNQLLD 93
Query: 658 RGFTMSVNHLADRTDDE 708
V +D T E
Sbjct: 94 PSAVHGVTQFSDLTPKE 110
>At5g50260.1 68418.m06224 cysteine proteinase, putative similar to
cysteine endopeptidase precursor CysEP GI:2944446 from
[Ricinus communis]
Length = 361
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +1
Query: 541 FERFKVKHQRQYASDLEHE-KRLNIFRQSLRYIHSNNRANRGFTMSVNHLADRTDDE 708
+ER++ H A LE + KR N+F+ ++++IH N+ ++ + + +N D T +E
Sbjct: 38 YERWRSHHT--VARSLEEKAKRFNVFKHNVKHIHETNKKDKSYKLKLNKFGDMTSEE 92
>At4g39090.1 68417.m05535 cysteine proteinase RD19a (RD19A) / thiol
protease identical to cysteine proteinase RD19a, thiol
protease SP:P43296, GI:435618 from [Arabidopsis
thaliana]
Length = 368
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 535 DEFERFKVKHQRQYASDLEHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHLADRTDDE 708
D F FK K + YAS+ EH+ R ++F+ +LR + + + T V +D T E
Sbjct: 49 DHFSLFKRKFGKVYASNEEHDYRFSVFKANLRRARRHQKLDPSATHGVTQFSDLTRSE 106
>At3g19400.2 68416.m02460 cysteine proteinase, putative
non-consensus AT acceptor site at exon 3; contains
similarity to cysteine protease CYP1 GI:2828252, TDI-65
GI:5726641 from [Lycopersicon esculentum]
Length = 290
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/69 (26%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +1
Query: 517 HDAHVHDEFERFKVKHQRQYASDLEHEKRLNIFRQSLRYIHSNNRA-NRGFTMSVNHLAD 693
++ V +E++ V++++ Y E E+R IF+ +L+++ +N +R F + + AD
Sbjct: 36 NETEVRLMYEQWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRFAD 95
Query: 694 RTDDELAAL 720
T++E A+
Sbjct: 96 LTNEEFRAI 104
>At3g19400.1 68416.m02461 cysteine proteinase, putative
non-consensus AT acceptor site at exon 3; contains
similarity to cysteine protease CYP1 GI:2828252, TDI-65
GI:5726641 from [Lycopersicon esculentum]
Length = 362
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/69 (26%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +1
Query: 517 HDAHVHDEFERFKVKHQRQYASDLEHEKRLNIFRQSLRYIHSNNRA-NRGFTMSVNHLAD 693
++ V +E++ V++++ Y E E+R IF+ +L+++ +N +R F + + AD
Sbjct: 36 NETEVRLMYEQWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRFAD 95
Query: 694 RTDDELAAL 720
T++E A+
Sbjct: 96 LTNEEFRAI 104
>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
protease, putative similar to cysteine proteinase RD21A
precursor (thiol protease) GI:435619, SP:P43297 from
[Arabidopsis thaliana]
Length = 463
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +1
Query: 520 DAHVHDEFERFKVKHQR----QYASDLEHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHL 687
D+ V +E + V+H + Q E ++R IF+ +LR+I +N N + + +
Sbjct: 43 DSEVERIYEAWMVEHGKKKMNQNGLGAEKDQRFEIFKDNLRFIDEHNTKNLSYKLGLTRF 102
Query: 688 ADRTDDELAAL 720
AD T++E ++
Sbjct: 103 ADLTNEEYRSM 113
>At3g43960.1 68416.m04706 cysteine proteinase, putative contains
similarity to cysteine proteinase RD21A (thiol protease)
GI:435619, SP:P43297 from [Arabidopsis thaliana]
Length = 376
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 517 HDAHVHDEFERFKVKHQRQYASDLEHEKRLNIFRQSLRYIHSNNR-ANRGFTMSVNHLAD 693
++ V +E++ V++ + Y E E+R IF+ +L+ I +N NR + +N +D
Sbjct: 33 NEGEVLTMYEQWLVENGKNYNGLGEKERRFKIFKDNLKRIEEHNSDPNRSYERGLNKFSD 92
Query: 694 RTDDELAA 717
T DE A
Sbjct: 93 LTADEFQA 100
>At4g23520.1 68417.m03390 cysteine proteinase, putative contains
similarity to cysteine proteinase (thiol protease) RD21A
GI:435619, SP:P43297 from [Arabidopsis thaliana]
Length = 356
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 541 FERFKVKHQRQYASDL-EHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHLADRTDDE 708
F+ + KH + Y + L E E+R F+ +LR+I +N N + + + AD T E
Sbjct: 47 FQMWMSKHGKTYTNALGEKERRFQNFKDNLRFIDQHNAKNLSYQLGLTRFADLTVQE 103
>At3g53090.1 68416.m05851 HECT-domain-containing protein /
ubiquitin-transferase family protein / IQ
calmodulin-binding motif-containing protein contains
Pfam profiles PF00632: HECT-domain
(ubiquitin-transferase), PF00612: IQ calmodulin-binding
motif
Length = 1142
Score = 35.1 bits (77), Expect = 0.047
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 73 TETEMNKETCLQVNSTQDQLQDIQSVLPDMTDFKYIGTETMQDADTAKWQMVQPVGD-KL 249
TE ++E V L I VL D +K I E +DA+TAK ++Q +G K
Sbjct: 165 TECNYSQERIKDVIGVNALLLRILIVLTDPKSWKIITNENFEDAETAKKIIIQFIGSCKS 224
Query: 250 NKYTMWVKYKKTL 288
Y+ +Y KTL
Sbjct: 225 GYYSAVRRYIKTL 237
>At4g36880.1 68417.m05229 cysteine proteinase, putative strong
similarity to cysteine proteinase COT44 precursor
SP:P25251 from [Brassica napus] (Rape)
Length = 376
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 589 EHEKRLNIFRQSLRYI--HSNNRANRGFTMSVNHLADRTDDELAAL 720
+ +KR NIF+ +LR+I H+ + N + + + D T+DE L
Sbjct: 69 DQDKRFNIFKDNLRFIDLHNEDNKNATYKLGLTKFTDLTNDEYRKL 114
>At3g13980.1 68416.m01765 expressed protein
Length = 357
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +1
Query: 520 DAHVHDEFERFKVKHQRQYASDLEHEKRLNIFRQSLRYIHSNNRANRGFTMS 675
+A +H++ E + H+R A+D E +R F LR+ +S++ + GF+ S
Sbjct: 54 NASLHEDREISPIYHRRSIAADFERSRRKTDF---LRHSNSSSSDSSGFSSS 102
>At2g47470.2 68415.m05924 thioredoxin family protein similar to
protein disulfide isomerase [Dictyostelium discoideum]
GI:2627440; contains Pfam profile: PF00085 Thioredoxin
Length = 266
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 3/25 (12%)
Frame = +3
Query: 21 VSGLPTLRYFYKD-RAGH--NGNRD 86
VSG PTL++F KD +AGH +G RD
Sbjct: 213 VSGFPTLKFFPKDNKAGHDYDGGRD 237
>At2g47470.1 68415.m05925 thioredoxin family protein similar to
protein disulfide isomerase [Dictyostelium discoideum]
GI:2627440; contains Pfam profile: PF00085 Thioredoxin
Length = 361
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 3/25 (12%)
Frame = +3
Query: 21 VSGLPTLRYFYKD-RAGH--NGNRD 86
VSG PTL++F KD +AGH +G RD
Sbjct: 213 VSGFPTLKFFPKDNKAGHDYDGGRD 237
>At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 193
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/59 (27%), Positives = 22/59 (37%)
Frame = -2
Query: 623 DCLKMFSLFSCSRSLAYCLWCLTLKRSNSSWTCASWTGRTNSFIGLKVAKCREPGPGNP 447
DC+ + LF R CL N C +G N F+ +A+ GP P
Sbjct: 12 DCIPICPLFDAGRQCTRGTMCLYRHEINRGLDCHGRSGLENPFVLEVLARACNTGPLKP 70
>At2g26380.1 68415.m03166 disease resistance protein-related / LRR
protein-related contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-2A
[Lycopersicon pimpinellifolium] gi|3894389|gb|AAC78594
Length = 480
Score = 28.7 bits (61), Expect = 4.1
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Frame = -2
Query: 290 FKVFLYLTHIVYLFSLSPTGCTICH------LAVSASCIVSVPIYLKSVMSGSTDWMSWS 129
F F T +++L L+PT CH L S I P + S TD SW+
Sbjct: 6 FHNFFIFTAVIFLRCLNPTAAATCHPDDEAGLLAFKSGITKDPSGILSTWKKGTDCCSWN 65
Query: 128 *SCVELTCRHVSLFISVSVVTGAIFI 51
R V L I + IF+
Sbjct: 66 GVSCPNGNRVVVLTIRIESDDAGIFL 91
>At1g33590.1 68414.m04158 disease resistance protein-related / LRR
protein-related contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
[Lycopersicon esculentum] gi|3894393|gb|AAC78596
Length = 477
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 296 SPFKVFLYLTHIVYLFSLSPTGCTICH 216
S F +F++ T +++L L+PTG CH
Sbjct: 3 SSFTLFIF-TFVIFLQCLNPTGAATCH 28
>At1g66200.1 68414.m07514 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (Glutamate--
ammonia ligase, GS1) [Lotus japonicus] SWISS-PROT:Q42899
Length = 356
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 448 GFPGPGSRHFATFNPMKEFVRPVHDAH 528
GFPGP ++ + K F R + DAH
Sbjct: 149 GFPGPQGPYYCSIGADKSFGRDIVDAH 175
>At3g08680.2 68416.m01009 leucine-rich repeat transmembrane protein
kinase, putative contains Pfam profile: PF00069
Eukaryotic protein kinase domain, PF00560 leucine Rich
Repeat (5 copies)
Length = 640
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -2
Query: 527 CASWTGRTNSFIGLKVAKCREPGPG 453
CASWTG T S +V R PG G
Sbjct: 54 CASWTGITCSKNNARVTALRLPGSG 78
>At3g08680.1 68416.m01008 leucine-rich repeat transmembrane protein
kinase, putative contains Pfam profile: PF00069
Eukaryotic protein kinase domain, PF00560 leucine Rich
Repeat (5 copies)
Length = 640
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -2
Query: 527 CASWTGRTNSFIGLKVAKCREPGPG 453
CASWTG T S +V R PG G
Sbjct: 54 CASWTGITCSKNNARVTALRLPGSG 78
>At1g09620.1 68414.m01079 tRNA synthetase class I (I, L, M and V)
family protein similar to cytosolic leucyl-tRNA
synthetase [Candida albicans] GI:9858190; contains Pfam
profile PF00133: tRNA synthetases class I (I, L, M and
V)
Length = 1084
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 406 DPDVFKVDSNMQCTGFPGPGSRHFATF 486
D DVF+ +S C P PG + F+TF
Sbjct: 27 DEDVFRAES---CENLPKPGEKFFSTF 50
>At5g58850.1 68418.m07374 myb family transcription factor (MYB119)
contains Pfam profile: PF00249 myb-like DNA binding
domain
Length = 430
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -3
Query: 490 G*RWRSVASRAPGTQCTAC---YCQL*RRQDRSHQYCNLHNPDSNDRSGSPGA 341
G +W +A PG + + RRQ+ ++ N D+NDR SP A
Sbjct: 176 GNKWAEIAKLIPGRTENSIKNHWNATKRRQNSKRKHKRESNADNNDRDASPSA 228
>At5g44530.1 68418.m05455 subtilase family protein contains Pfam
profiles: PF00082 subtilase family
Length = 840
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 34 PPYGTSIKIAPVTTETEMNKETCLQVNST 120
PPYG S+K++P M + L V T
Sbjct: 776 PPYGVSMKVSPTQFSIAMGENQVLSVTLT 804
>At1g62340.1 68414.m07034 subtilisin-like serine protease / abnormal
leaf shape1 (ALE1) identical to subtilisin-like serine
protease [Arabidopsis thaliana] GI:16444944
Length = 832
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 4 KTYQFTSAVYPPYGTSIKIAPV--TTETEMNKETCLQVNSTQ 123
KT + +V PP GT++++ P T + ++ ++ N TQ
Sbjct: 762 KTETYLGSVLPPNGTTVRLTPTWFTVPPQKTQDLDIEFNVTQ 803
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.132 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,516,760
Number of Sequences: 28952
Number of extensions: 299766
Number of successful extensions: 923
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -