Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30625
(787 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026212-4|AAF99973.2| 386|Caenorhabditis elegans Hypothetical ... 33 0.23
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ... 29 2.9
Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical pr... 29 3.8
U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein. 29 3.8
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z48783-2|CAC42295.1| 805|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z48783-1|CAA88701.1| 780|Caenorhabditis elegans Hypothetical pr... 28 8.7
AF233652-1|AAF63475.1| 780|Caenorhabditis elegans RFX-type tran... 28 8.7
AF226156-1|AAF61564.1| 805|Caenorhabditis elegans RFX-like tran... 28 8.7
>AF026212-4|AAF99973.2| 386|Caenorhabditis elegans Hypothetical
protein F52G3.5 protein.
Length = 386
Score = 33.1 bits (72), Expect = 0.23
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 536 TTTCTRPRTRFSL-KKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TT 682
TTT P T KK ++R+ PKT + + +T T APT + E TT
Sbjct: 195 TTTTEEPSTTSEYRKKSKKNRSKRPKTTKTTTTSTTTTEAPTTTTEEYTT 244
>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
protein Y51B11A.1 protein.
Length = 1079
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 527 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 691
P TTT T P T + +P S T +T + + ++T+T AP+ S T T T
Sbjct: 118 PVQTTTTTAPET--TSTEPPSSSTSPVQTTTTTAPETTSTEAPSSSTTPVQTTTT 170
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 527 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 691
P TTT T P T + +P S T +T + + ++T+T +P+ S T T T
Sbjct: 210 PVQTTTTTAPET--TSTEPPSSSTTPVQTTTTTAPETTSTESPSSSTTPVQTTTT 262
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 527 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 691
P TTT T P T + +P S T +T + + ++T+T +P+ S T T T
Sbjct: 486 PVQTTTITAPET--TSTEPPSSSTTPVQTTTTTAPETTSTESPSSSTTPVQTTTT 538
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 527 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 691
P TTT T P T + +P S T +T + + ++T+T P+ S T T T
Sbjct: 187 PVQTTTTTAPET--TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTT 239
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 527 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 691
P TTT T P T + +P S T +T + + ++T+T P+ S T T T
Sbjct: 302 PVQTTTITAPET--TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTT 354
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 527 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 691
P TTT T P T + +P S T +T + + ++T+T P+ S T T T
Sbjct: 417 PVQTTTITAPET--TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTT 469
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 527 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 691
P TTT T P T + +P S T +T + + ++T+T P+ S T T T
Sbjct: 532 PVQTTTTTAPET--TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTT 584
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 527 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 691
P TTT T P T + +P S T +T + + ++T+T P+ S T T T
Sbjct: 555 PVQTTTTTAPET--TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTT 607
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 527 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 691
P TTT T P T + +P S T +T + + ++T+T P+ S T T T
Sbjct: 578 PVQTTTTTAPET--TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTT 630
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 527 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 691
P TTT T P T + +P S T +T + + ++T+T P+ S T T T
Sbjct: 601 PVQTTTTTAPET--TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTT 653
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 527 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTLLT 691
P TTT T P T + +P S T +T + + ++T+T P+ S T T T
Sbjct: 624 PVQTTTTTAPET--TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTT 676
>Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical
protein E02H4.1 protein.
Length = 664
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -2
Query: 141 AAWLIDEWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTHFRCY 1
+AW D + +N + E + LS+ Q+HC+ CQ+D + Y
Sbjct: 501 SAWC-DSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQYTTTY 546
>U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein.
Length = 664
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -2
Query: 141 AAWLIDEWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTHFRCY 1
+AW D + +N + E + LS+ Q+HC+ CQ+D + Y
Sbjct: 501 SAWC-DSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQYTTTY 546
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 530 KATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPT 670
+ TTT +P T S KK + T P K S+ +T T +P V T
Sbjct: 375 QVTTTTKKPSTTTSTKKLTTTTTTTP--KPSQKPTTTTTKSPVVITT 419
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 536 TTTCTRPRTRFSLKKPARSRTLAPKTKA-SRSRDSTNTLAPTVSPTE*TTLLT 691
TTT T T + + T P T + ++ +T T PT +PT TT T
Sbjct: 236 TTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTTTPTTTPTTTTTPTT 288
>Z48783-2|CAC42295.1| 805|Caenorhabditis elegans Hypothetical
protein F33H1.1b protein.
Length = 805
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 466 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 561
P+G ++ Y I Y N V P G + LY ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209
>Z48783-1|CAA88701.1| 780|Caenorhabditis elegans Hypothetical
protein F33H1.1a protein.
Length = 780
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 466 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 561
P+G ++ Y I Y N V P G + LY ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184
>AF233652-1|AAF63475.1| 780|Caenorhabditis elegans RFX-type
transcription factor DAF-19 short variant protein.
Length = 780
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 466 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 561
P+G ++ Y I Y N V P G + LY ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184
>AF226156-1|AAF61564.1| 805|Caenorhabditis elegans RFX-like
transcription factor DAF-19 protein.
Length = 805
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 466 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 561
P+G ++ Y I Y N V P G + LY ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.137 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,378,747
Number of Sequences: 27780
Number of extensions: 264575
Number of successful extensions: 1048
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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