Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30623
         (355 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr 1|||Ma...    25   3.4  
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    25   4.5  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    24   6.0  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    24   7.9  
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    24   7.9  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    24   7.9  

>SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 177 TYSTVINNINKYQQRYKIAFRKNIRSLK 260
           +YS  + N+  Y QR ++A   N+  LK
Sbjct: 172 SYSPALKNVLNYSQRERVANLANVSILK 199


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -2

Query: 321 NCKILNMQFFFFCKPNKNIYTLGI*CFYERLFCNVVDI 208
           +C +   +FFF      N+Y++   C    +F N++ I
Sbjct: 115 SCSLNTQKFFFIIVAASNVYSIFQLCGCLLMFNNIISI 152


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 40  NDIALLDVKWRVRGVHVRV 96
           NDIALLD +W +    +RV
Sbjct: 144 NDIALLDSRWSMMFTKLRV 162


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 252 SLKCIYFCLAYKKKRIAYLVFYSFSLIIN 338
           SLK +  CL  KK+R+A       SL IN
Sbjct: 268 SLKNVVTCLDCKKERVAVDPLMDISLDIN 296


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 240 YERLFCNVVDIYLYYLLPWS 181
           Y  +F  +VD++L + L W+
Sbjct: 286 YPPVFAKIVDLFLRFFLSWT 305


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 216 QRYKIAFRKNIRSLKCIYFCLAYKKKRI 299
           +R+K +FRK+ R +  I  C+   K R+
Sbjct: 336 KRFKDSFRKHFRDISRIMDCVGCDKCRL 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,344,334
Number of Sequences: 5004
Number of extensions: 23941
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)