Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30623
         (355 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)               32   0.12 
SB_33587| Best HMM Match : SAMP (HMM E-Value=2.7)                      29   1.4  
SB_11573| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.9  
SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)           28   1.9  
SB_16310| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.9  
SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)                    28   2.5  
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)         28   2.5  
SB_484| Best HMM Match : bZIP_1 (HMM E-Value=1.4)                      28   2.5  
SB_48760| Best HMM Match : bZIP_1 (HMM E-Value=0.95)                   27   3.3  
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   4.4  
SB_14582| Best HMM Match : Gamma-thionin (HMM E-Value=1.1)             27   5.8  
SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.8  
SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.8  
SB_40672| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.7  
SB_12835| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.7  
SB_20348| Best HMM Match : Planc_extracel (HMM E-Value=5.4)            26   7.7  

>SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)
          Length = 322

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 270 NIYTLGI*CFYERLFCNVVDIYLYYLLPWSMYRECERVRRMH 145
           N YT+ I C+Y  + C V  +YL++ L   + +ECE     H
Sbjct: 158 NTYTILILCYYPAILCIVKPVYLFFGL--GVDKECESCYSFH 197


>SB_33587| Best HMM Match : SAMP (HMM E-Value=2.7)
          Length = 488

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 171 ECERVRRMHVRARAPPRHAPHLR 103
           +CE V R H+  R+PP + P L+
Sbjct: 423 QCESVARKHMPRRSPPAYKPQLK 445


>SB_11573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 405

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 186 WSMYRECERVRRMHVRARAPPRHAP 112
           WSM+ EC  + R+ V +R PP  +P
Sbjct: 146 WSMFNECFPLIRVKVSSRDPPYMSP 170


>SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)
          Length = 806

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 155 VGCTCAREHRRDTPPTSAPHTRTCTPRTLHLTS 57
           V  + + ++RR +P + +PH+ T TP    +TS
Sbjct: 653 VSSSASSKNRRSSPVSRSPHSTTGTPNATGITS 685


>SB_16310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 186 WSMYRECERVRRMHVRARAPPRHAP 112
           WSM+ EC  + R+ V +R PP  +P
Sbjct: 12  WSMFNECFPLIRVKVSSRDPPYMSP 36


>SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)
          Length = 1136

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 186 TVINNINKYQQRYKIAFRKNIRSLKCI 266
           T++ + N+Y Q Y+  F     SLKCI
Sbjct: 179 TMVTSENEYVQEYRARFEIKTNSLKCI 205


>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
          Length = 428

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = -3

Query: 293 FFFVSQTKIYTL*GSNVFTKGY-FVTLLI--FIY-IIYYRGVCIESASECVGCTCAREHR 126
           FF  + T I T    +V  +GY ++ L +   +Y ++YY G    S +E +       HR
Sbjct: 355 FFICAITMIVTY---SVLLRGYKYMELSLDKLVYNLVYYFGATKYSVTEIMKIVLCSIHR 411

Query: 125 RDTPPTSAPHTRTCTPR 75
           R+   +   H  +C PR
Sbjct: 412 RNVYVSLYIHLLSCAPR 428


>SB_484| Best HMM Match : bZIP_1 (HMM E-Value=1.4)
          Length = 263

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 186 TVINNINKYQQRYKIAFRKNIRSLKCI 266
           T++ + N+Y Q Y+  F     SLKCI
Sbjct: 179 TMVTSENEYVQEYRARFEIKTNSLKCI 205


>SB_48760| Best HMM Match : bZIP_1 (HMM E-Value=0.95)
          Length = 221

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 189 VINNINKYQQRYKIAFRKNIRSLKCI 266
           ++ + N+Y+Q Y+  F     SLKCI
Sbjct: 1   MVTSENEYEQEYRARFEIKTNSLKCI 26


>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1980

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 161 ECVG--CTCAREHRRDTPPTSAPHTRTCTPRTLHLTS 57
           +C G  C C  +H ++TP T      TC P ++H+ S
Sbjct: 530 QCYGKECWCVDKHGQETPGTRTTGLITC-PASVHVLS 565


>SB_14582| Best HMM Match : Gamma-thionin (HMM E-Value=1.1)
          Length = 364

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 324 KNCKILNMQFFFFCKPNKNIYTLGI*CFYERLFCNVVDI 208
           +NC++ ++   +F K N  + ++   CF ER  C V  I
Sbjct: 181 RNCEVTSIAARYFVKRNCEVTSIAALCFVER-NCEVTSI 218


>SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -3

Query: 158 CVGCTCAREHRRDTPPTSAPHTRTCTPRTLHLTSNKA 48
           C+  T         PPT+AP T T  P T   TS  A
Sbjct: 772 CLASTSTSAATTTAPPTTAPPTTTKEPTTDASTSTSA 808


>SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1289

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 146 TCAREHRRDTPPTSAPH 96
           +C  +HR D PPTS  H
Sbjct: 359 SCPLDHREDAPPTSTLH 375


>SB_40672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 258

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 207 YLYYLLPWSMYRECERVRRMHVRARAPPRH 118
           Y Y   PW +Y  C +V   +V A  PP H
Sbjct: 228 YRYVRTPWLLYHRCIQV-CTYVMASLPPVH 256


>SB_12835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 146 TCAREHRRDTPPTSAPHTRTCTPRTLHLTSNKAIS 42
           T AR HR    P  A   R C+  TL+L    A+S
Sbjct: 235 TDARRHRDQDAPADARTCRDCSAITLNLPVQLALS 269


>SB_20348| Best HMM Match : Planc_extracel (HMM E-Value=5.4)
          Length = 148

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = -3

Query: 224 VTLLIFIYIIYYRGVCIESASECVGCTCAREHRRDTPPTSAPHTRTCTPRTLHLTS 57
           +TL+IF+  +YY G        CV    AR         S  H RT + R LHLT+
Sbjct: 62  ITLVIFLTALYYAGF----FGLCVS-AWARHMLGARSEISRYHYRTRSARGLHLTA 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,141,980
Number of Sequences: 59808
Number of extensions: 188072
Number of successful extensions: 658
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)