Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30623
         (355 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99171-2|CAB16314.1|  710|Caenorhabditis elegans Hypothetical pr...    29   0.93 
Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical p...    29   1.2  
Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical p...    29   1.2  
U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr...    28   2.2  
Z81593-3|CAB04741.1|  332|Caenorhabditis elegans Hypothetical pr...    27   3.8  
AC024765-5|AAF60527.3|  975|Caenorhabditis elegans Hypothetical ...    27   3.8  
Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical p...    26   8.7  
U41624-2|AAF99943.2|  351|Caenorhabditis elegans C.elegans homeo...    26   8.7  
AF244368-1|AAF77181.1|  351|Caenorhabditis elegans LIM homeobox ...    26   8.7  

>Z99171-2|CAB16314.1|  710|Caenorhabditis elegans Hypothetical
           protein F47G4.2 protein.
          Length = 710

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 315 KILNMQFFFFCKPNKNIYTLGI 250
           K+LN  FF FCK   N+Y+L I
Sbjct: 148 KLLNPDFFQFCKSFPNLYSLDI 169


>Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical
           protein Y69H2.10b protein.
          Length = 975

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -3

Query: 173 ESASECV-GCTCAREHRRDTPPTSAPHTRTCTPRTLHLTSNKAISLS*NI*KKTC 12
           ++ ++C+ GCTC   ++RD+      H+R C   T   + N+A S   N  +K C
Sbjct: 484 KAPAKCLPGCTCRPAYKRDSDSGQCVHSRQCF-GTTKCSDNEAWSKCHNC-EKVC 536


>Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical
           protein Y69H2.10a protein.
          Length = 572

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -3

Query: 173 ESASECV-GCTCAREHRRDTPPTSAPHTRTCTPRTLHLTSNKAISLS*NI*KKTC 12
           ++ ++C+ GCTC   ++RD+      H+R C   T   + N+A S   N  +K C
Sbjct: 484 KAPAKCLPGCTCRPAYKRDSDSGQCVHSRQCF-GTTKCSDNEAWSKCHNC-EKVC 536


>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical
           protein C52E12.4 protein.
          Length = 1487

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +1

Query: 31  FYDN--DIALLDVKWRVRGVHVRVCGAEVGGVSRRCSRAHVHPTHSLALSIHT-PR 189
           FY+   D+A+ D   +++  HVR   A   G+  +  R H HP  +++   HT PR
Sbjct: 122 FYEEVKDLAICDAMAQLQQDHVREITARHNGIIEKQQRIH-HPPGTVSGGTHTLPR 176


>Z81593-3|CAB04741.1|  332|Caenorhabditis elegans Hypothetical
           protein T20B3.3 protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 22  F*IFYDNDIALLDVKWRVRGVHVRVCGAEVG 114
           F +F+   I++  VKW +  VH+  C  ++G
Sbjct: 38  FCVFFKTPISMQSVKWSMMNVHLFSCLLDLG 68


>AC024765-5|AAF60527.3|  975|Caenorhabditis elegans Hypothetical
           protein Y39A3CR.3 protein.
          Length = 975

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 210 YQQRYKIAFRKNIRSLKCIYFCLAYKK 290
           +   Y +    NI   KC+Y CL ++K
Sbjct: 87  HSDNYTVKIEANILLAKCLYACLEFRK 113


>Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical
           protein F35C5.11 protein.
          Length = 161

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -3

Query: 254 GSNVFTKGYFVTLLIFIYIIYYRGVCIESASECVGCTCAREHRRDTP 114
           GS++ + G F      +Y I Y GV ++  +   GC   RE     P
Sbjct: 59  GSDMCSNGTFCLKRAKVYQIGYSGVNLKWTTYTKGCATLREDNDQIP 105


>U41624-2|AAF99943.2|  351|Caenorhabditis elegans C.elegans homeobox
           protein 14 protein.
          Length = 351

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 131 HRRDTPPTSAPHTRTCTPRTLHLTSNKAISLS*NI 27
           +R +TP T  P     TP  L    +  +SLS N+
Sbjct: 298 YRNETPSTDPPPMHMTTPSVLTTNFSTPLSLSTNV 332


>AF244368-1|AAF77181.1|  351|Caenorhabditis elegans LIM homeobox
           protein CEH-14 protein.
          Length = 351

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 131 HRRDTPPTSAPHTRTCTPRTLHLTSNKAISLS*NI 27
           +R +TP T  P     TP  L    +  +SLS N+
Sbjct: 298 YRNETPSTDPPPMHMTTPSVLTTNFSTPLSLSTNV 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,656,444
Number of Sequences: 27780
Number of extensions: 142995
Number of successful extensions: 450
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)