Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30622
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   1.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.8  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 318 SRRLKRNTASSGRCSRTSRHSLVL 247
           S ++K+N   SGR + T R+  +L
Sbjct: 354 SMKIKQNVPQSGRVNNTQRNEYLL 377


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 517 RCSAACSSPPTTTWSFAGNA 576
           +CSAA +  P  TW+  G A
Sbjct: 442 KCSAAGNPTPQVTWALDGFA 461


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 517 RCSAACSSPPTTTWSFAGNA 576
           +CSAA +  P  TW+  G A
Sbjct: 442 KCSAAGNPTPQVTWALDGFA 461


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 607 RNVQYFDPCP*RCPRMT 557
           RNV+Y+  CP   P +T
Sbjct: 188 RNVEYYSCCPEPYPDIT 204


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 330 CDVTATPP 353
           CDVT TPP
Sbjct: 332 CDVTGTPP 339


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 279 NDRSKLCCASDDG 317
           N ++K C A DDG
Sbjct: 441 NSKTKCCFAQDDG 453


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,776
Number of Sequences: 438
Number of extensions: 2551
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)