Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30622
(623 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g16405.1 68415.m01878 transducin family protein / WD-40 repea... 78 5e-15
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 54 8e-08
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 49 3e-06
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 48 7e-06
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 45 5e-05
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 44 6e-05
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 44 8e-05
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 44 1e-04
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 43 2e-04
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 42 3e-04
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 42 3e-04
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 42 3e-04
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 42 3e-04
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 42 3e-04
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 42 4e-04
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 41 8e-04
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 40 0.001
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 39 0.002
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 39 0.002
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 39 0.002
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 38 0.004
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 38 0.004
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 38 0.004
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 38 0.007
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 38 0.007
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 38 0.007
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 37 0.009
At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10... 37 0.009
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 37 0.013
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 37 0.013
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 37 0.013
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 36 0.017
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 36 0.017
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 36 0.017
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 36 0.017
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 36 0.017
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 36 0.017
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 36 0.022
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 36 0.022
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 36 0.022
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 36 0.022
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 36 0.022
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 36 0.022
At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6 ... 36 0.029
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 36 0.029
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea... 36 0.029
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 36 0.029
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 36 0.029
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 35 0.038
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 35 0.038
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 35 0.038
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 35 0.038
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 35 0.038
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 35 0.038
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 35 0.038
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea... 35 0.050
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 35 0.050
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 35 0.050
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 35 0.050
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 35 0.050
At5g52250.1 68418.m06485 transducin family protein / WD-40 repea... 34 0.067
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 34 0.067
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 34 0.067
At3g52190.1 68416.m05731 transducin family protein / WD-40 repea... 34 0.067
At3g42660.1 68416.m04436 transducin family protein / WD-40 repea... 34 0.067
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 34 0.067
At2g25420.1 68415.m03045 transducin family protein / WD-40 repea... 34 0.067
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 33 0.12
At2g34260.2 68415.m04192 transducin family protein / WD-40 repea... 33 0.12
At2g34260.1 68415.m04191 transducin family protein / WD-40 repea... 33 0.12
At2g19540.1 68415.m02283 transducin family protein / WD-40 repea... 33 0.12
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 33 0.12
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 33 0.12
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 33 0.15
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 33 0.15
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 33 0.15
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 33 0.15
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 33 0.15
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 33 0.20
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 33 0.20
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 33 0.20
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 33 0.20
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 33 0.20
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 32 0.27
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 32 0.27
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 32 0.27
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 32 0.27
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 32 0.36
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 32 0.36
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 32 0.36
At3g21060.1 68416.m02662 transducin family protein / WD-40 repea... 32 0.36
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 32 0.36
At2g31300.1 68415.m03821 transducin family protein / WD-40 repea... 32 0.36
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea... 32 0.36
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea... 32 0.36
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 31 0.47
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 31 0.47
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 31 0.62
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 31 0.62
At5g19920.1 68418.m02370 transducin family protein / WD-40 repea... 31 0.62
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 31 0.62
At1g80710.1 68414.m09470 transducin family protein / WD-40 repea... 31 0.62
At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5 ... 31 0.82
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 31 0.82
At5g45760.1 68418.m05625 transducin family protein / WD-40 repea... 30 1.1
At3g50590.1 68416.m05533 transducin family protein / WD-40 repea... 30 1.1
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 30 1.1
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 30 1.1
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 30 1.1
At5g23730.1 68418.m02782 transducin family protein / WD-40 repea... 30 1.4
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea... 30 1.4
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 30 1.4
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 30 1.4
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 30 1.4
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 29 1.9
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 29 1.9
At3g56900.1 68416.m06329 aladin-related / adracalin-related weak... 29 2.5
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 29 2.5
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 29 2.5
At1g19320.1 68414.m02402 pathogenesis-related thaumatin family p... 29 2.5
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 29 3.3
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 29 3.3
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 29 3.3
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ... 29 3.3
At5g19050.1 68418.m02265 expressed protein 29 3.3
At4g34280.1 68417.m04873 transducin family protein / WD-40 repea... 29 3.3
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 29 3.3
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 28 4.4
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam... 28 4.4
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 28 4.4
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 28 4.4
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 28 4.4
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 28 4.4
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea... 28 5.8
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea... 28 5.8
At3g26640.1 68416.m03329 transducin family protein / WD-40 repea... 28 5.8
At3g08850.1 68416.m01029 transducin family protein / WD-40 repea... 28 5.8
At1g64350.1 68414.m07292 transducin family protein / WD-40 repea... 28 5.8
At1g32190.1 68414.m03959 expressed protein 28 5.8
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 27 7.7
At4g22760.1 68417.m03286 pentatricopeptide (PPR) repeat-containi... 27 7.7
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 27 7.7
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 27 7.7
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 27 7.7
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 27 7.7
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea... 27 7.7
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 27 7.7
>At2g16405.1 68415.m01878 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD-repeat protein 13 (SP:Q9H1Z4) [Homo
sapiens]
Length = 482
Score = 77.8 bits (183), Expect = 5e-15
Identities = 40/125 (32%), Positives = 66/125 (52%)
Frame = +3
Query: 195 ISENYAFTGVHHIFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILD 374
+ Y+F G+H IFDQ V+V+KF + L + DG++++C + P V L
Sbjct: 155 VEHAYSFVGMHCIFDQCKSSVTVLKFGHMSSDILAYGASDGSLTVCSL-LEEPSVLKQLT 213
Query: 375 GHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPANNN 554
GH+K VT D+S++N+ + + LD + +W+ R +R + +P C F P NNN
Sbjct: 214 GHSKDVTDFDFSSNNQYIASSSLDKTIRVWELSRGVCIRVIYG--ISPQYCIRFHPVNNN 271
Query: 555 MVIRG 569
+ G
Sbjct: 272 FLSAG 276
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 54.0 bits (124), Expect = 8e-08
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Frame = +3
Query: 339 TATPPRVSVILDGHTKAVTGCDWSASN-ELLVTCGLDGALCLWD--AGRRRKLREVL 500
T P R+S+ L GHTKAVT DWS S+ LL + GLDGA+ +W+ + ++K+R L
Sbjct: 146 TEMPSRMSISLTGHTKAVTAIDWSTSHVHLLASAGLDGAVYVWNVWSNDKKKVRAFL 202
Score = 34.3 bits (75), Expect = 0.067
Identities = 25/109 (22%), Positives = 45/109 (41%)
Frame = +3
Query: 243 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNE 422
HT+ V+ + ++ + L A DG V + +V + + H V WS
Sbjct: 159 HTKAVTAIDWSTSHVHLLASAGLDGAVYVWNVWSNDKKKVRAFLHHNAPVKDVKWSKQGL 218
Query: 423 LLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPANNNMVIRG 569
L++CG D L+D R + + + ++ F P N N+ + G
Sbjct: 219 SLLSCGYDCTSRLFDVERGVETQSFKEDEVVGVV--KFHPDNCNVFLSG 265
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 48.8 bits (111), Expect = 3e-06
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +3
Query: 237 DQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSAS 416
D + + + ++ ++ + R L A DDGTV + D T P++S L H+ G +S S
Sbjct: 175 DPNGQVLRLLDYSRSSRHLLVTAGDDGTVHLWDTTGRSPKMS-WLKQHSAPTAGVCFSPS 233
Query: 417 NE-LLVTCGLDGALCLWDAGRRR 482
NE ++ + G+D L +D+G RR
Sbjct: 234 NEKIIASVGMDKKLYTYDSGSRR 256
Score = 41.9 bits (94), Expect = 3e-04
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Frame = +3
Query: 243 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWS-ASN 419
HT ++ V + D L S G + + ++ A+ R + + D + + + D+S +S
Sbjct: 134 HTSTITGVMYNCKDEH-LASVSVGGDLIVHNL-ASGARATELKDPNGQVLRLLDYSRSSR 191
Query: 420 ELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPANNNMV 560
LLVT G DG + LWD R L Q +AP F P+N ++
Sbjct: 192 HLLVTAGDDGTVHLWDTTGRSPKMSWLKQHSAPTAGVCFSPSNEKII 238
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/89 (22%), Positives = 35/89 (39%)
Frame = +3
Query: 237 DQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSAS 416
D E +S + F+ +C V I D+ L GHT +TG ++
Sbjct: 89 DSAEECLSAISFSKKGSRYICSGGTGQIVKIWDLQRK--LCIKKLKGHTSTITGVMYNCK 146
Query: 417 NELLVTCGLDGALCLWDAGRRRKLREVLD 503
+E L + + G L + + + E+ D
Sbjct: 147 DEHLASVSVGGDLIVHNLASGARATELKD 175
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 47.6 bits (108), Expect = 7e-06
Identities = 31/109 (28%), Positives = 49/109 (44%)
Frame = +3
Query: 243 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNE 422
HT V F N + + S D TV I DVT + +L H+ VT D++
Sbjct: 112 HTNYAFCVNF-NPQSNMIVSGSFDETVRIWDVTTG--KCLKVLPAHSDPVTAVDFNRDGS 168
Query: 423 LLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPANNNMVIRG 569
L+V+ DG +WD+G ++ ++D P+ F P N ++ G
Sbjct: 169 LIVSSSYDGLCRIWDSGTGHCVKTLIDDENPPVSFVRFSP-NGKFILVG 216
Score = 36.7 bits (81), Expect = 0.013
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Frame = +3
Query: 243 HTEQVSVVKFANNDRSKLCCASDDGTVSICDV-TATPPRVSVILD--GHTKAVTGCDWSA 413
H VS VKF+++ R L AS D T+ + T P + + GH ++ +S+
Sbjct: 23 HNRAVSSVKFSSDGRL-LASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDVAFSS 81
Query: 414 SNELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPANNNMVIRG 569
+V+ D L LWD ++ ++ C F P +NM++ G
Sbjct: 82 DARFIVSASDDKTLKLWDVETGSLIKTLIGH-TNYAFCVNFNP-QSNMIVSG 131
Score = 33.5 bits (73), Expect = 0.12
Identities = 21/78 (26%), Positives = 40/78 (51%)
Frame = +3
Query: 234 FDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSA 413
F H +S V F+++ R + ASDD T+ + DV T + ++ GHT +++
Sbjct: 67 FTGHENGISDVAFSSDARF-IVSASDDKTLKLWDVE-TGSLIKTLI-GHTNYAFCVNFNP 123
Query: 414 SNELLVTCGLDGALCLWD 467
+ ++V+ D + +WD
Sbjct: 124 QSNMIVSGSFDETVRIWD 141
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 44.8 bits (101), Expect = 5e-05
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3
Query: 294 LCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNE-LLVTCGLDGALCLWDA 470
+ ++D V +CD+ + S L GH V +WS S+E +L T G DGA+ WD
Sbjct: 163 IAAGTEDVQVRLCDIASGA--FSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDI 220
Query: 471 GRRRKLREVLDQ 506
RR VLDQ
Sbjct: 221 -RRAGCFRVLDQ 231
Score = 33.1 bits (72), Expect = 0.15
Identities = 15/53 (28%), Positives = 31/53 (58%)
Frame = +3
Query: 354 RVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREVLDQLA 512
R +++L GH ++V C ++++++ L T G D + +W G + V D++A
Sbjct: 390 RTTLMLRGHYESVNTCCFNSNDQELYTSGSDRQILVWSPGGTVEDEMVQDEVA 442
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 44.4 bits (100), Expect = 6e-05
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 294 LCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNE-LLVTCGLDGALCLWDA 470
+ +DD V +CD+ + S L GH V +WS S+E +L T G DGA+ WD
Sbjct: 163 IAAGTDDVQVRLCDIASGA--FSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDI 220
Query: 471 GRRRKLREVLD 503
RR VLD
Sbjct: 221 -RRAGCFRVLD 230
Score = 31.9 bits (69), Expect = 0.36
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +3
Query: 354 RVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAG 473
R +++L GH ++V C ++++++ L T G D + +W G
Sbjct: 390 RTTLMLRGHYESVNTCCFNSNDQELYTSGADRQIIVWSPG 429
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 44.0 bits (99), Expect = 8e-05
Identities = 31/106 (29%), Positives = 51/106 (48%)
Frame = +3
Query: 243 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNE 422
HT +S VKF+N D + L AS D T+ + +AT + +GH+ ++ WS+ +
Sbjct: 42 HTAAISCVKFSN-DGNLLASASVDKTMILW--SATNYSLIHRYEGHSSGISDLAWSSDSH 98
Query: 423 LLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPANNNMV 560
+ D L +WDA + +VL + C F P +N +V
Sbjct: 99 YTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNPPSNLIV 144
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/90 (25%), Positives = 46/90 (51%)
Frame = +3
Query: 228 HIFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDW 407
H ++ H+ +S + +++ D C ASDD T+ I D + P +L GHT V ++
Sbjct: 79 HRYEGHSSGISDLAWSS-DSHYTCSASDDCTLRIWDARS-PYECLKVLRGHTNFVFCVNF 136
Query: 408 SASNELLVTCGLDGALCLWDAGRRRKLREV 497
+ + L+V+ D + +W+ + +R +
Sbjct: 137 NPPSNLIVSGSFDETIRIWEVKTGKCVRMI 166
Score = 34.3 bits (75), Expect = 0.067
Identities = 26/100 (26%), Positives = 45/100 (45%)
Frame = +3
Query: 243 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNE 422
HT V V F N + + S D T+ I +V T V +I H+ ++ ++
Sbjct: 127 HTNFVFCVNF-NPPSNLIVSGSFDETIRIWEVK-TGKCVRMI-KAHSMPISSVHFNRDGS 183
Query: 423 LLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQP 542
L+V+ DG+ +WDA L+ ++D + + F P
Sbjct: 184 LIVSASHDGSCKIWDAKEGTCLKTLIDDKSPAVSFAKFSP 223
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 348 PPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDA 470
P R L+GHT A++ +S LL + +D + LW A
Sbjct: 32 PYRHLKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSA 72
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 WD-40
repeats (PF00400) (2 weak)
Length = 1108
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/82 (29%), Positives = 37/82 (45%)
Frame = +3
Query: 270 FANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDG 449
F D + + +D T+ I +V V L GH K +TG +S + +LV+ G D
Sbjct: 869 FHPQDNNVIAIGMEDSTIHIYNVRVD--EVKSKLKGHQKRITGLAFSTALNILVSSGADA 926
Query: 450 ALCLWDAGRRRKLREVLDQLAA 515
+C W K + V Q+ A
Sbjct: 927 QICFWSIDTWEKRKSVAIQMPA 948
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +3
Query: 231 IFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPP-RVSVILDGHTKAVTGCDW 407
I + HT++V ++F++N + L +S D T I +++A + L GH K V W
Sbjct: 269 ILESHTDEVWFLQFSHNGKY-LASSSKDQTAIIWEISADGHISLKHTLVGHHKPVIAILW 327
Query: 408 SASNELLVTCGLDGALCLWD 467
S + ++TCG + + WD
Sbjct: 328 SPDDRQVLTCGAEEVIRRWD 347
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/86 (22%), Positives = 38/86 (44%)
Frame = +3
Query: 228 HIFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDW 407
H H + V + ++ +DR L C +++ + DV + V + G ++ C W
Sbjct: 313 HTLVGHHKPVIAILWSPDDRQVLTCGAEE-VIRRWDVDSGDC-VHMYEKGGISPIS-CGW 369
Query: 408 SASNELLVTCGLDGALCLWDAGRRRK 485
+ ++ D ++C+WD R K
Sbjct: 370 YPDGQGIIAGMTDRSICMWDLDGREK 395
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +3
Query: 270 FANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASN-ELLVTCGLD 446
F ++ + S+D V I + ++ V L GH AV WS +N +L + D
Sbjct: 496 FGGYKQAFIASGSEDSQVYIWH--RSTGKLIVELPGHAGAVNCVSWSPTNLHMLASASDD 553
Query: 447 GALCLWDAGR 476
G + +W R
Sbjct: 554 GTIRIWGLDR 563
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +3
Query: 306 SDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWD 467
S DG + + AT +L GH V W+AS LL TCG D ++ +W+
Sbjct: 67 SFDGNTCVWENFATDSESVSVLRGHESEVKSVSWNASGSLLATCGRDKSVWIWE 120
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 291 KLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLW 464
K+ C+ D+ C T +S + +GH+ V ++A+ + +VTC D A+ +W
Sbjct: 164 KIWCSEDEDGDYNCVQT-----LSELNNGHSSTVWSISFNAAGDKMVTCSDDLAVKIW 216
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/74 (32%), Positives = 35/74 (47%)
Frame = +3
Query: 270 FANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDG 449
F D + + DD T+ I +V V L GH+K +TG +S +LV+ G D
Sbjct: 884 FHPQDNNIIAIGMDDSTIQIYNVRVD--EVKSKLKGHSKRITGLAFSNVLNVLVSSGADA 941
Query: 450 ALCLWDAGRRRKLR 491
LC+W+ K R
Sbjct: 942 QLCVWNTDGWEKQR 955
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 369 LDGHTKAVTGCDWSASNELL--VTCGLDGALCLWDAGRRRKLREVLDQLAAPL 521
+D H V +S N+ L +TCG D + +WDA K R + AP+
Sbjct: 458 IDAHVGGVNDISFSTPNKQLCVITCGDDKTIKVWDAATGVK-RHTFEGHEAPV 509
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/74 (32%), Positives = 35/74 (47%)
Frame = +3
Query: 270 FANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDG 449
F D + + DD T+ I +V V L GH+K +TG +S +LV+ G D
Sbjct: 884 FHPQDNNIIAIGMDDSTIQIYNVRVD--EVKSKLKGHSKRITGLAFSNVLNVLVSSGADA 941
Query: 450 ALCLWDAGRRRKLR 491
LC+W+ K R
Sbjct: 942 QLCVWNTDGWEKQR 955
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 369 LDGHTKAVTGCDWSASNELL--VTCGLDGALCLWDAGRRRKLREVLDQLAAPL 521
+D H V +S N+ L +TCG D + +WDA K R + AP+
Sbjct: 458 IDAHVGGVNDISFSTPNKQLCVITCGDDKTIKVWDAATGVK-RHTFEGHEAPV 509
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 WD-40
repeats domain (PF00400) (6 weak)
Length = 1120
Score = 41.9 bits (94), Expect = 3e-04
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +3
Query: 270 FANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDG 449
F D + + DD T+ I +V V L GH+K +TG +S +LV+ G D
Sbjct: 873 FHPQDNNIIAIGMDDSTIQIYNVRVD--EVKSKLKGHSKRITGLAFSNVLNVLVSSGADA 930
Query: 450 ALCLWDA-GRRRKLREVL 500
LC+W+ G ++ +VL
Sbjct: 931 QLCVWNTDGWEKQKSKVL 948
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 WD-40
repeats domain (PF00400) (6 weak)
Length = 1120
Score = 41.9 bits (94), Expect = 3e-04
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +3
Query: 270 FANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDG 449
F D + + DD T+ I +V V L GH+K +TG +S +LV+ G D
Sbjct: 873 FHPQDNNIIAIGMDDSTIQIYNVRVD--EVKSKLKGHSKRITGLAFSNVLNVLVSSGADA 930
Query: 450 ALCLWDA-GRRRKLREVL 500
LC+W+ G ++ +VL
Sbjct: 931 QLCVWNTDGWEKQKSKVL 948
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 41.5 bits (93), Expect = 4e-04
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Frame = +3
Query: 228 HIFDQHTEQVSVVKF-ANNDRSKLCCASDDGTVSICDVTA--TPPRVSVILDGHTKAVTG 398
H F H VS + F +++++ L SDD TV + D+ A T + I++ H AVT
Sbjct: 138 HYFRGHKGVVSSILFHPDSNKNILISGSDDATVRVWDLNAKNTEKKCLAIMEKHFSAVTS 197
Query: 399 CDWSASNELLVTCGLDGALCLWD 467
S L + G D + LWD
Sbjct: 198 IALSEDGLTLFSAGRDKVVNLWD 220
Score = 35.1 bits (77), Expect = 0.038
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = +3
Query: 243 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNE 422
H ++ V+F+ D+ + AS D TV I ++ +GHT +V +
Sbjct: 540 HKRRIFSVEFSTVDQCVMT-ASGDKTVKIWAIS--DGSCLKTFEGHTSSVLRASFITDGT 596
Query: 423 LLVTCGLDGALCLWD 467
V+CG DG L LW+
Sbjct: 597 QFVSCGADGLLKLWN 611
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 375 GHTKAVTGCDWSASNELLVTCGLDGALCLWD 467
GH V G AS LL T G D + +WD
Sbjct: 100 GHEGPVMGMACHASGGLLATAGADRKVLVWD 130
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +3
Query: 252 QVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLV 431
Q++ V F++ K+ D V + D+ ++ L+GH +TG S L+
Sbjct: 182 QITAVSFSDA-ADKIFTGGVDNDVKVWDLRKG--EATMTLEGHQDTITGMSLSPDGSYLL 238
Query: 432 TCGLDGALCLWD 467
T G+D LC+WD
Sbjct: 239 TNGMDNKLCVWD 250
Score = 31.9 bits (69), Expect = 0.36
Identities = 11/56 (19%), Positives = 27/56 (48%)
Frame = +3
Query: 363 VILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCC 530
++L GH A+ W++ +V+ D + WD ++++++ + + CC
Sbjct: 90 MVLKGHKNAILDLHWTSDGSQIVSASPDKTVRAWDVETGKQIKKMAEHSSFVNSCC 145
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/80 (31%), Positives = 37/80 (46%)
Frame = +3
Query: 237 DQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSAS 416
D H + VS + N + AS DG + + D+++ R GH AV G S
Sbjct: 53 DGHRDGVSCMAKNPNYLKGIFSASMDGDIRLWDISSR--RTVCQFPGHQGAVRGLTASTD 110
Query: 417 NELLVTCGLDGALCLWDAGR 476
+LV+CG D + LW+ R
Sbjct: 111 GNVLVSCGTDCTVRLWNVPR 130
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +3
Query: 270 FANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDG 449
F D + + DD ++ I +V V L GH K VTG +S +LV+ G D
Sbjct: 894 FHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKLKGHQKRVTGLAFSNVLNVLVSSGADS 951
Query: 450 ALCLW 464
LC+W
Sbjct: 952 QLCVW 956
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = +3
Query: 369 LDGHTKAVTGCDWSASNELL--VTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQP 542
+D H V +S N+ L VTCG D + +WDA KL A C Q
Sbjct: 460 IDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQK 519
Query: 543 AN 548
N
Sbjct: 520 EN 521
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +3
Query: 270 FANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDG 449
F D + + DD ++ I +V V L GH K VTG +S +LV+ G D
Sbjct: 894 FHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKLKGHQKRVTGLAFSNVLNVLVSSGADS 951
Query: 450 ALCLW 464
LC+W
Sbjct: 952 QLCVW 956
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = +3
Query: 369 LDGHTKAVTGCDWSASNELL--VTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQP 542
+D H V +S N+ L VTCG D + +WDA KL A C Q
Sbjct: 460 IDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQK 519
Query: 543 AN 548
N
Sbjct: 520 EN 521
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 39.1 bits (87), Expect = 0.002
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Frame = +3
Query: 243 HTEQVSVVKFANND-RSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASN 419
H + VS V+F+ N + + AS D TV + +++ R + L GHT V+ S
Sbjct: 149 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST--LAGHTGYVSTVAVSPDG 206
Query: 420 ELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLC 527
L + G DG + LWD +KL + LC
Sbjct: 207 SLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALC 242
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = +3
Query: 243 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVI---LDGHTKAVTGCDWSA 413
HT+ V+ + ++ + AS D ++ + +T V L GH+ V S+
Sbjct: 14 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS 73
Query: 414 SNELLVTCGLDGALCLWD 467
+ ++ DG L LWD
Sbjct: 74 DGQFALSGSWDGELRLWD 91
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 38.3 bits (85), Expect = 0.004
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +3
Query: 237 DQHTEQVSVVKFANNDR-SKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSA 413
D H E VS V+F+ N + AS D TV + ++ R S++ GH+ + S
Sbjct: 146 DGHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQNCKLRNSLV--GHSGYLNTVAVSP 203
Query: 414 SNELLVTCGLDGALCLWDAGRRRKL 488
L + G DG + LWD +KL
Sbjct: 204 DGSLCASGGKDGVILLWDLAEGKKL 228
Score = 28.3 bits (60), Expect = 4.4
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 3/113 (2%)
Frame = +3
Query: 231 IFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVI---LDGHTKAVTGC 401
I HT+ V+ + ++ + AS D ++ + +T V L GH+ V
Sbjct: 10 IMRAHTDIVTAIATPIDNSDIIVTASRDKSIILWKLTKDDKSYGVAQRRLTGHSHFVEDV 69
Query: 402 DWSASNELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPANNNMV 560
S+ + ++ DG L LWD R + +L F N +V
Sbjct: 70 VLSSDGQFALSGSWDGELRLWDLATGETTRRFVGH-TKDVLSVAFSTDNRQIV 121
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +3
Query: 294 LCCASDDGTVSICDVTATPPR---VSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLW 464
L S D TV I + ++ +V+ + HT+ V C WS S +LL T DG +W
Sbjct: 42 LASCSGDNTVRIWEQSSLSRSWTCKTVLEETHTRTVRSCAWSPSGQLLATASFDGTTGIW 101
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +3
Query: 294 LCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWD 467
L AS DGT I + L+GH V W+AS L TC D ++ +W+
Sbjct: 89 LATASFDGTTGIWKNYGSEFECISTLEGHENEVKSVSWNASGSCLATCSRDKSVWIWE 146
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 38.3 bits (85), Expect = 0.004
Identities = 26/79 (32%), Positives = 34/79 (43%)
Frame = +3
Query: 294 LCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAG 473
L AS D TV I ++ ++ +L GH + V CD+S E LVT D LW
Sbjct: 232 LATASSDKTVKIWNLDGF--KLEKVLTGHERWVWDCDFSMDGEYLVTASSDTTARLWSM- 288
Query: 474 RRRKLREVLDQLAAPLLCC 530
R K V +CC
Sbjct: 289 RAGKEEMVYQAHRKATVCC 307
Score = 27.9 bits (59), Expect = 5.8
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Frame = +3
Query: 282 DRSKLCCASDDGTVSICDVTATPPRVSVI-LDGHTKAVTGCDWSASNELLVTCGLDGALC 458
++ KL A + + + D+ + P + V HTK V + + ++ + DG++
Sbjct: 51 EKGKLVAACNPH-IRLFDLRSYNPHIPVRNFVSHTKNVMAVGFQYTGHMMYSGSEDGSVK 109
Query: 459 LWDAGRRRKLREVLDQLAAPLLCCVFQPANNNMVIRGQR*GH 584
+WD R RE + +P+ V P N +I G + G+
Sbjct: 110 IWDLRVRECQREF--RSVSPVNTVVLHP-NQTELISGDQNGN 148
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 37.5 bits (83), Expect = 0.007
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 243 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTA-TPPRVSVILDGHTKAVTGCDWSASN 419
H +V V+F+N+ + L AS D T I V + L+ H V+ WS +
Sbjct: 223 HKNEVWFVQFSNSGKY-LATASSDCTAIIWKVLDDNKVELKHTLESHQNPVSFVSWSPDD 281
Query: 420 ELLVTCGLDGALCLWD 467
L+TCG L LWD
Sbjct: 282 TKLLTCGNAEVLKLWD 297
Score = 35.5 bits (78), Expect = 0.029
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = +3
Query: 234 FDQHTEQVSVVK--FANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDW 407
F H + V++ F D S + S+D V I ++ T P +L GH+ V W
Sbjct: 436 FSGHRQSKYVIRSCFGGLDSSFIASGSEDSQVYIWNLKNTKPLE--VLSGHSMTVNCVSW 493
Query: 408 SASN-ELLVTCGLDGALCLWDAGRRRK 485
+ N +L + D + +W G+ K
Sbjct: 494 NPKNPRMLASASDDQTIRIWGPGKPNK 520
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +3
Query: 369 LDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPAN 548
L GHT V DW+ +V+ DG L +W+A +K + A ++ C F P
Sbjct: 61 LQGHTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSPNG 119
Query: 549 NNMVIRG 569
++ G
Sbjct: 120 QSVACGG 126
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +3
Query: 369 LDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPAN 548
L GHT V DW+ +V+ DG L +W+A +K + A ++ C F P
Sbjct: 61 LQGHTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSPNG 119
Query: 549 NNMVIRG 569
++ G
Sbjct: 120 QSVACGG 126
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 37.1 bits (82), Expect = 0.009
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +3
Query: 243 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTG-CDWSASN 419
H + + + D S L AS D T+ + DV + + +L GHT V C ++
Sbjct: 127 HYNAIFDISWIKGD-SCLLTASGDQTIKVWDVEEN--KCTGVLIGHTGTVKSMCSHPTNS 183
Query: 420 ELLVTCGLDGALCLWD 467
+LLV+ DG LWD
Sbjct: 184 DLLVSGSRDGCFALWD 199
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +3
Query: 282 DRSKLCCASDDGTVSICDVTATPPRVS-VILDGHTKAVTGCDWSASN-ELLVTCGLDGAL 455
D + S DG I V P+V +IL GH VT DWS S + T D +
Sbjct: 349 DGEYVLSGSSDGNAYIWQVNK--PQVDPIILKGHDFEVTAVDWSPSEIGKVATASDDFTV 406
Query: 456 CLWD 467
LW+
Sbjct: 407 RLWN 410
>At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 37.1 bits (82), Expect = 0.009
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +3
Query: 270 FANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDG 449
F D + + +D ++ I +V V L GH K +TG +S + +LV+ G D
Sbjct: 880 FHPQDNNIIAIGMEDSSIHIYNVRVD--EVKTKLKGHQKHITGLAFSTALNILVSSGADA 937
Query: 450 ALCLWDAGRRRKLREVLDQL 509
L W A K + QL
Sbjct: 938 QLFFWTADSWEKKKSSAIQL 957
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 36.7 bits (81), Expect = 0.013
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +3
Query: 384 KAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPANNNMVI 563
K V WS + + L +DG +C++D R + L + L+ P+ VF P + ++
Sbjct: 159 KFVLSVAWSPNGKRLACGSMDGTICVFDVDRSKLLHQ-LEGHNMPVRSLVFSPVDPRVLF 217
Query: 564 RGQR*GH 584
G GH
Sbjct: 218 SGSDDGH 224
Score = 33.5 bits (73), Expect = 0.12
Identities = 25/88 (28%), Positives = 35/88 (39%)
Frame = +3
Query: 228 HIFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDW 407
H + H V + F+ D L SDDG V++ D S + GHT V D
Sbjct: 194 HQLEGHNMPVRSLVFSPVDPRVLFSGSDDGHVNMHDAEGKTLLGS--MSGHTSWVLSVDA 251
Query: 408 SASNELLVTCGLDGALCLWDAGRRRKLR 491
S + T D + LWD R ++
Sbjct: 252 SPDGGAIATGSSDRTVRLWDLKMRAAIQ 279
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 36.7 bits (81), Expect = 0.013
Identities = 27/98 (27%), Positives = 42/98 (42%)
Frame = +3
Query: 198 SENYAFTGVHHIFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDG 377
+E Y H FD V+ V ++ D L +DD V + +V + +
Sbjct: 338 TETYILKQQGHYFD-----VNCVTYSP-DSQLLATGADDNKVKVWNVMSGT--CFITFTE 389
Query: 378 HTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLR 491
HT AVT + A N L++ LDG + WD R + +
Sbjct: 390 HTNAVTALHFMADNHSLLSASLDGTVRAWDFKRYKNYK 427
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 36.7 bits (81), Expect = 0.013
Identities = 27/98 (27%), Positives = 42/98 (42%)
Frame = +3
Query: 198 SENYAFTGVHHIFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDG 377
+E Y H FD V+ V ++ D L +DD V + +V + +
Sbjct: 378 TETYILKQQGHYFD-----VNCVTYSP-DSQLLATGADDNKVKVWNVMSGT--CFITFTE 429
Query: 378 HTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLR 491
HT AVT + A N L++ LDG + WD R + +
Sbjct: 430 HTNAVTALHFMADNHSLLSASLDGTVRAWDFKRYKNYK 467
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 36.3 bits (80), Expect = 0.017
Identities = 24/78 (30%), Positives = 35/78 (44%)
Frame = +3
Query: 231 IFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWS 410
+F H V V ++ + R L S D T+ I ++ ++ L GH V DWS
Sbjct: 397 VFRGHVGPVYQVSWSADSRL-LLSGSKDSTLKIWEIRTK--KLKQDLPGHADEVFAVDWS 453
Query: 411 ASNELLVTCGLDGALCLW 464
E +V+ G D L LW
Sbjct: 454 PDGEKVVSGGKDRVLKLW 471
Score = 35.5 bits (78), Expect = 0.029
Identities = 23/75 (30%), Positives = 32/75 (42%)
Frame = +3
Query: 243 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNE 422
H E V V F+ D +L S D TV + D+ P + GH V WS +
Sbjct: 108 HAEAVLCVSFSP-DGKQLASGSGDTTVRLWDLYTETPLFTC--KGHKNWVLTVAWSPDGK 164
Query: 423 LLVTCGLDGALCLWD 467
LV+ G +C W+
Sbjct: 165 HLVSGSKSGEICCWN 179
Score = 33.9 bits (74), Expect = 0.088
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +3
Query: 303 ASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRR 482
+S DG I D+T + + L GHT AVT W ++ T D + +W+ + +
Sbjct: 217 SSKDGDARIWDITLK--KSIICLSGHTLAVTCVKWGGDG-IIYTGSQDCTIKMWETTQGK 273
Query: 483 KLREV 497
+RE+
Sbjct: 274 LIREL 278
Score = 33.9 bits (74), Expect = 0.088
Identities = 28/110 (25%), Positives = 49/110 (44%)
Frame = +3
Query: 243 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNE 422
H + V+ V F+ D + AS D +V + + + + GH V WSA +
Sbjct: 359 HQQLVNHVYFSP-DGKWIASASFDKSVRLWN--GITGQFVTVFRGHVGPVYQVSWSADSR 415
Query: 423 LLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPANNNMVIRGQ 572
LL++ D L +W+ R +KL++ L A + + P +V G+
Sbjct: 416 LLLSGSKDSTLKIWEI-RTKKLKQDLPGHADEVFAVDWSPDGEKVVSGGK 464
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 36.3 bits (80), Expect = 0.017
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 237 DQHTEQVSVVK-FANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSA 413
D H + V+ V F D+ L SDD T + D T V LDGHT V+ +
Sbjct: 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-TKSCVQT-LDGHTHNVSAVCFHP 239
Query: 414 SNELLVTCGLDGALCLWDA 470
+++T DG + +W A
Sbjct: 240 ELPIIITGSEDGTVRIWHA 258
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 36.3 bits (80), Expect = 0.017
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 237 DQHTEQVSVVK-FANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSA 413
D H + V+ V F D+ L SDD T + D T V LDGHT V+ +
Sbjct: 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-TKSCVQT-LDGHTHNVSAVCFHP 239
Query: 414 SNELLVTCGLDGALCLWDA 470
+++T DG + +W A
Sbjct: 240 ELPIIITGSEDGTVRIWHA 258
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 36.3 bits (80), Expect = 0.017
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 237 DQHTEQVSVVK-FANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSA 413
D H + V+ V F D+ L SDD T + D T V LDGHT V+ +
Sbjct: 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-TKSCVQT-LDGHTHNVSAVCFHP 239
Query: 414 SNELLVTCGLDGALCLWDA 470
+++T DG + +W A
Sbjct: 240 ELPIIITGSEDGTVRIWHA 258
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 36.3 bits (80), Expect = 0.017
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +3
Query: 237 DQHTEQVSVVKFANNDR-SKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSA 413
D H E VS V+F+ N + AS D TV + ++ R + L GH+ + S
Sbjct: 146 DGHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQNCKLRNT--LAGHSGYLNTVAVSP 203
Query: 414 SNELLVTCGLDGALCLWDAGRRRKL 488
L + G DG + LWD +KL
Sbjct: 204 DGSLCASGGKDGVILLWDLAEGKKL 228
Score = 27.9 bits (59), Expect = 5.8
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 3/109 (2%)
Frame = +3
Query: 243 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVI---LDGHTKAVTGCDWSA 413
HT+ V+ + ++ + +S D ++ + +T V + GH+ V S+
Sbjct: 14 HTDMVTAIATPVDNSDVIVTSSRDKSIILWKLTKEDKSYGVAQRRMTGHSHFVQDVVLSS 73
Query: 414 SNELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPANNNMV 560
+ ++ DG L LWD R + +L F N +V
Sbjct: 74 DGQFALSGSWDGELRLWDLATGESTRRFVGH-TKDVLSVAFSTDNRQIV 121
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 36.3 bits (80), Expect = 0.017
Identities = 24/80 (30%), Positives = 34/80 (42%)
Frame = +3
Query: 228 HIFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDW 407
H + HT+ VS ++F L A D V I DV + + + GH KAV +
Sbjct: 276 HTWSGHTKGVSAIRFFPKQGHLLLSAGMDCKVKIWDVYNSGKCMRTYM-GHAKAVRDICF 334
Query: 408 SASNELLVTCGLDGALCLWD 467
S +T G D + WD
Sbjct: 335 SNDGSKFLTAGYDKNIKYWD 354
Score = 30.7 bits (66), Expect = 0.82
Identities = 18/87 (20%), Positives = 39/87 (44%)
Frame = +3
Query: 234 FDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSA 413
+DQH V+ + F +N+R + +SDD ++ + + P + I + H ++
Sbjct: 408 YDQHLGAVNTITFVDNNR-RFVTSSDDKSLRVWEF-GIPVVIKYISEPHMHSMPSISVHP 465
Query: 414 SNELLVTCGLDGALCLWDAGRRRKLRE 494
+ L LD + ++ R +L +
Sbjct: 466 NGNWLAAQSLDNQILIYSTRERFQLNK 492
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 35.9 bits (79), Expect = 0.022
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +3
Query: 312 DGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWD 467
DG + DV P V GHT+ V G WS S + L + G D + +WD
Sbjct: 244 DGLIINNDVRIRSPIVETYR-GHTQEVCGLKWSGSGQQLASGGNDNVVHIWD 294
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 312 DGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGA-LCLWDAGRRRKL 488
D TV + D + V +D VT +W+ V GL+ + + LWD+ R+L
Sbjct: 159 DHTVYLWDASTGSTSELVTIDEEKGPVTSINWAPDGRH-VAVGLNNSEVQLWDSASNRQL 217
Query: 489 R 491
R
Sbjct: 218 R 218
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 35.9 bits (79), Expect = 0.022
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +3
Query: 312 DGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWD 467
DG + DV P V GHT+ V G WS S + L + G D + +WD
Sbjct: 234 DGLIINNDVRIRSPIVETYR-GHTQEVCGLKWSGSGQQLASGGNDNVVHIWD 284
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 312 DGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGA-LCLWDAGRRRKL 488
D TV + D + V +D VT +W+ V GL+ + + LWD+ R+L
Sbjct: 149 DHTVYLWDASTGSTSELVTIDEEKGPVTSINWAPDGRH-VAVGLNNSEVQLWDSASNRQL 207
Query: 489 R 491
R
Sbjct: 208 R 208
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 35.9 bits (79), Expect = 0.022
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Frame = +3
Query: 255 VSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVT 434
V+ + F+ + R L G +SI ++ + SVI D H ++ ++ A+ +L++
Sbjct: 227 VTALSFSTDGRPLLASGGSFGVISIWNLNKKRLQ-SVIRDAHDSSIISLNFLANEPVLMS 285
Query: 435 CGLDGALCLW----DAGRRRKLREVLDQLAAPLLCCVFQPANNNMVIRGQ 572
D +L +W + G R LR +AP LC F +++ GQ
Sbjct: 286 ASADNSLKMWIFDTNDGDPRLLR-FRSGHSAPPLCIRFYSNGRHILSAGQ 334
Score = 30.7 bits (66), Expect = 0.82
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +3
Query: 294 LCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWD 467
L +DD + + DV ++ GHT +T +S + +++ +DG+L +WD
Sbjct: 530 LATVADDFVIRLYDVVTL--KMVREFRGHTDRITDLCFSEDGKWVISSSMDGSLRIWD 585
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 35.9 bits (79), Expect = 0.022
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +3
Query: 294 LCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAG 473
L AS D TV I +V ++ +L GH + V C +S E LVT D LW
Sbjct: 226 LATASSDKTVKIWNVDGF--KLEKVLTGHQRWVWDCVFSVDGEFLVTASSDMTARLWSMP 283
Query: 474 RRRKLREVLDQLAAPLLCCV 533
++++ A + C +
Sbjct: 284 AGKEVKVYQGHHKATVCCAL 303
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 35.9 bits (79), Expect = 0.022
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 237 DQHTEQVSVVK-FANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSA 413
D H + V+ V F D+ L SDD T + D T V L+GHT V+ +
Sbjct: 182 DAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-TKSCVQT-LEGHTHNVSAVSFHP 239
Query: 414 SNELLVTCGLDGALCLWDA 470
+++T DG + +W A
Sbjct: 240 ELPIIITGSEDGTVRIWHA 258
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 35.9 bits (79), Expect = 0.022
Identities = 25/81 (30%), Positives = 41/81 (50%)
Frame = +3
Query: 243 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNE 422
H + + V+F +++ + ASDD T+ I + + VSV L GH V + +
Sbjct: 92 HLDYIRTVQF-HHEYPWIVSASDDQTIRIWNWQSRTC-VSV-LTGHNHYVMCASFHPKED 148
Query: 423 LLVTCGLDGALCLWDAGRRRK 485
L+V+ LD + +WD G RK
Sbjct: 149 LVVSASLDQTVRVWDIGALRK 169
Score = 29.1 bits (62), Expect = 2.5
Identities = 20/90 (22%), Positives = 40/90 (44%)
Frame = +3
Query: 222 VHHIFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGC 401
V ++ + H V+ F + + +DD V + + T L GH V+
Sbjct: 196 VKYVLEGHDRGVNWAAF-HPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSSV 254
Query: 402 DWSASNELLVTCGLDGALCLWDAGRRRKLR 491
+ A +++V+ D ++ +WDA +R L+
Sbjct: 255 MFHAKQDIIVSNSEDKSIRVWDATKRTGLQ 284
>At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6
WD-40 repeats (PF0400); identical to WD-40 repeat
protein (SP:O22467) [Arabidopsis thaliana]
Length = 424
Score = 35.5 bits (78), Expect = 0.029
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Frame = +3
Query: 243 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSV----ILDGHTKAVTGCDWS 410
H+ + + ++ + L SDD + + D+ ATP S+ I H V W
Sbjct: 177 HSSEGYGLSWSKFKQGHLLSGSDDAQICLWDINATPKNKSLDAQQIFKAHEGVVEDVAWH 236
Query: 411 ASNELLV-TCGLDGALCLWDAGRRRKLREVLDQLA--APLLCCVFQPANNNMVIRG 569
+E L + G D L +WD + V +A + C F P N +V G
Sbjct: 237 LRHEYLFGSVGDDQYLLIWDLRSPSASKPVQSVVAHSMEVNCLAFNPFNEWVVATG 292
Score = 28.3 bits (60), Expect = 4.4
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 13/92 (14%)
Frame = +3
Query: 228 HIFDQHTEQVSVVKFANNDRSKL--CCASD----------DGTVSICDVTATPPRVSVIL 371
H FD H E+V V + + + L CC D ++ D PP + I
Sbjct: 311 HTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTVEDAEDGPPELLFIH 370
Query: 372 DGHTKAVTGCDWSASNELLV-TCGLDGALCLW 464
GHT ++ W+ + ++ + D L +W
Sbjct: 371 GGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 35.5 bits (78), Expect = 0.029
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = +3
Query: 243 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNE 422
H V VK+ N + + L AS D + + D+ S GHTK VT W +E
Sbjct: 309 HKNIVLSVKW-NQNGNWLLTASKDQIIKLYDIRTMKELQS--FRGHTKDVTSLAWHPCHE 365
Query: 423 -LLVTCGLDGALCLWDAGRRRKLREV 497
V+ DG++C W G E+
Sbjct: 366 EYFVSGSSDGSICHWIVGHENPQIEI 391
Score = 35.1 bits (77), Expect = 0.038
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 17/99 (17%)
Frame = +3
Query: 243 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSV-------ILD--------- 374
H E + + F D K C SDD TV + D T S+ +++
Sbjct: 206 HKESIRDLSFCKTDL-KFCSCSDDTTVKVWDFTKCVDESSLTGYIGKGVIEIRFGVMPCN 264
Query: 375 -GHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKL 488
GH V DW + LLV+ G D + LWD R+L
Sbjct: 265 AGHGWDVKSVDWHPTKSLLVSGGKDQLVKLWDTRSGREL 303
>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to L. erythrorhizon LEC14B, GenBank accession
number Q40153
Length = 493
Score = 35.5 bits (78), Expect = 0.029
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +3
Query: 243 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPR--VSVILDGHTKAVTGCDWSAS 416
HT V+ V FA+ + + SDD + D R + +L GH + VT D
Sbjct: 270 HTSDVNTVCFADESGNLILSGSDDNLCKVWDRRCFIGRDKPAGVLVGHLEGVTFIDSRGD 329
Query: 417 NELLVTCGLDGALCLWD 467
++ G D + LWD
Sbjct: 330 GRYFISNGKDQTIKLWD 346
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 35.5 bits (78), Expect = 0.029
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +3
Query: 243 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNE 422
H+ VK+ D+ L DDG V DV A +S +L GH V D S N+
Sbjct: 134 HSAPARFVKYPVQDKLHLVSGGDDGVVKYWDV-AGATVISDLL-GHKDYVRCGDCSPVND 191
Query: 423 -LLVTCGLDGALCLWDA 470
+LVT D + +WDA
Sbjct: 192 SMLVTGSYDHTVKVWDA 208
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 35.5 bits (78), Expect = 0.029
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +3
Query: 231 IFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWS 410
I H ++ + D L +S D TV + DV + ++V L+GH AV +S
Sbjct: 187 IIPAHDFEILSCDWNKYDDCILATSSVDKTVKVWDVRSYRVPLAV-LNGHGYAVRKVKFS 245
Query: 411 ASNE-LLVTCGLDGALCLWD 467
L+ +C D ++CLWD
Sbjct: 246 PHRRSLIASCSYDMSVCLWD 265
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +3
Query: 264 VKFANNDRSKLCCASDDGTVSICDVTATPPRVSV-ILDGHTKAVTGCDWSAS-NELLVTC 437
V ++ + S L A DG+V I D PP + H + V D++ + + +T
Sbjct: 66 VCWSESHDSVLIAAIGDGSVKIYDTALPPPSNPIRSFQEHAREVQSVDYNPTRRDSFLTS 125
Query: 438 GLDGALCLWDAGRRRKLR 491
D + LW R +R
Sbjct: 126 SWDDTVKLWAMDRPASVR 143
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 35.1 bits (77), Expect = 0.038
Identities = 26/89 (29%), Positives = 41/89 (46%)
Frame = +3
Query: 303 ASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRR 482
A+ + TVSI D+ RV+ I GH+ V WS + EL+ + D A+ LW
Sbjct: 650 AASENTVSIFDIENNNKRVN-IFKGHSSNVHSVCWSPNGELVASVSED-AVKLWSLSSGD 707
Query: 483 KLREVLDQLAAPLLCCVFQPANNNMVIRG 569
+ E L VF P+ ++++ G
Sbjct: 708 CIHE-LSNSGNKFHSVVFHPSYPDLLVIG 735
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/93 (21%), Positives = 35/93 (37%)
Frame = +3
Query: 282 DRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCL 461
D L A D V I ++ +V + H +T + ++ L T D + +
Sbjct: 519 DGKLLASAGHDKKVFIWNMETL--QVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKI 576
Query: 462 WDAGRRRKLREVLDQLAAPLLCCVFQPANNNMV 560
WDA + AAP++ F P ++
Sbjct: 577 WDASDPGYFLRTISGHAAPVMSIDFHPKKTELL 609
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 35.1 bits (77), Expect = 0.038
Identities = 26/89 (29%), Positives = 41/89 (46%)
Frame = +3
Query: 303 ASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRR 482
A+ + TVSI D+ RV+ I GH+ V WS + EL+ + D A+ LW
Sbjct: 652 AASENTVSIFDIENNNKRVN-IFKGHSSNVHSVCWSPNGELVASVSED-AVKLWSLSSGD 709
Query: 483 KLREVLDQLAAPLLCCVFQPANNNMVIRG 569
+ E L VF P+ ++++ G
Sbjct: 710 CIHE-LSNSGNKFHSVVFHPSYPDLLVIG 737
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/93 (21%), Positives = 35/93 (37%)
Frame = +3
Query: 282 DRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCL 461
D L A D V I ++ +V + H +T + ++ L T D + +
Sbjct: 521 DGKLLASAGHDKKVFIWNMETL--QVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKI 578
Query: 462 WDAGRRRKLREVLDQLAAPLLCCVFQPANNNMV 560
WDA + AAP++ F P ++
Sbjct: 579 WDASDPGYFLRTISGHAAPVMSIDFHPKKTELL 611
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 35.1 bits (77), Expect = 0.038
Identities = 26/89 (29%), Positives = 41/89 (46%)
Frame = +3
Query: 303 ASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRR 482
A+ + TVSI D+ RV+ I GH+ V WS + EL+ + D A+ LW
Sbjct: 652 AASENTVSIFDIENNNKRVN-IFKGHSSNVHSVCWSPNGELVASVSED-AVKLWSLSSGD 709
Query: 483 KLREVLDQLAAPLLCCVFQPANNNMVIRG 569
+ E L VF P+ ++++ G
Sbjct: 710 CIHE-LSNSGNKFHSVVFHPSYPDLLVIG 737
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/93 (21%), Positives = 35/93 (37%)
Frame = +3
Query: 282 DRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCL 461
D L A D V I ++ +V + H +T + ++ L T D + +
Sbjct: 521 DGKLLASAGHDKKVFIWNMETL--QVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKI 578
Query: 462 WDAGRRRKLREVLDQLAAPLLCCVFQPANNNMV 560
WDA + AAP++ F P ++
Sbjct: 579 WDASDPGYFLRTISGHAAPVMSIDFHPKKTELL 611
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 35.1 bits (77), Expect = 0.038
Identities = 26/89 (29%), Positives = 41/89 (46%)
Frame = +3
Query: 303 ASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRR 482
A+ + TVSI D+ RV+ I GH+ V WS + EL+ + D A+ LW
Sbjct: 652 AASENTVSIFDIENNNKRVN-IFKGHSSNVHSVCWSPNGELVASVSED-AVKLWSLSSGD 709
Query: 483 KLREVLDQLAAPLLCCVFQPANNNMVIRG 569
+ E L VF P+ ++++ G
Sbjct: 710 CIHE-LSNSGNKFHSVVFHPSYPDLLVIG 737
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/93 (21%), Positives = 35/93 (37%)
Frame = +3
Query: 282 DRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCL 461
D L A D V I ++ +V + H +T + ++ L T D + +
Sbjct: 521 DGKLLASAGHDKKVFIWNMETL--QVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKI 578
Query: 462 WDAGRRRKLREVLDQLAAPLLCCVFQPANNNMV 560
WDA + AAP++ F P ++
Sbjct: 579 WDASDPGYFLRTISGHAAPVMSIDFHPKKTELL 611
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 35.1 bits (77), Expect = 0.038
Identities = 26/89 (29%), Positives = 41/89 (46%)
Frame = +3
Query: 303 ASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRR 482
A+ + TVSI D+ RV+ I GH+ V WS + EL+ + D A+ LW
Sbjct: 652 AASENTVSIFDIENNNKRVN-IFKGHSSNVHSVCWSPNGELVASVSED-AVKLWSLSSGD 709
Query: 483 KLREVLDQLAAPLLCCVFQPANNNMVIRG 569
+ E L VF P+ ++++ G
Sbjct: 710 CIHE-LSNSGNKFHSVVFHPSYPDLLVIG 737
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/93 (21%), Positives = 35/93 (37%)
Frame = +3
Query: 282 DRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCL 461
D L A D V I ++ +V + H +T + ++ L T D + +
Sbjct: 521 DGKLLASAGHDKKVFIWNMETL--QVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKI 578
Query: 462 WDAGRRRKLREVLDQLAAPLLCCVFQPANNNMV 560
WDA + AAP++ F P ++
Sbjct: 579 WDASDPGYFLRTISGHAAPVMSIDFHPKKTELL 611
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 35.1 bits (77), Expect = 0.038
Identities = 23/81 (28%), Positives = 41/81 (50%)
Frame = +3
Query: 243 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNE 422
H + + V+F +++ + ASDD T+ I + + +SV L GH V + +
Sbjct: 92 HLDYIRTVQF-HHENPWIVSASDDQTIRIWNWQSRTC-ISV-LTGHNHYVMCASFHPKED 148
Query: 423 LLVTCGLDGALCLWDAGRRRK 485
L+V+ LD + +WD G +K
Sbjct: 149 LVVSASLDQTVRVWDIGALKK 169
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/86 (22%), Positives = 38/86 (44%)
Frame = +3
Query: 222 VHHIFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGC 401
V ++ + H V+ F + + +DD V + + T L GH V+
Sbjct: 196 VKYVLEGHDRGVNWASF-HPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSSV 254
Query: 402 DWSASNELLVTCGLDGALCLWDAGRR 479
+ A +++V+ D ++ +WDA +R
Sbjct: 255 MFHAKQDIIVSNSEDKSIRVWDATKR 280
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 35.1 bits (77), Expect = 0.038
Identities = 22/68 (32%), Positives = 35/68 (51%)
Frame = +3
Query: 264 VKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGL 443
V+ ++DR K+ SDD +V + D T ++ L GH V+ C S E ++T
Sbjct: 902 VRAISSDRGKIVSGSDDLSVIVWDKQTT--QLLEELKGHDSQVS-CVKMLSGERVLTAAH 958
Query: 444 DGALCLWD 467
DG + +WD
Sbjct: 959 DGTVKMWD 966
>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
repeat (6 copies,1 weak)
Length = 757
Score = 34.7 bits (76), Expect = 0.050
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 369 LDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQP-A 545
L+GH V W+++ LL++ D + +W+ R+ L + A + C F P
Sbjct: 46 LEGHQGCVNALAWNSNGSLLISGSDDLRINIWNYSSRKLLHSIDTGHTANIFCTKFVPET 105
Query: 546 NNNMVIRG 569
++ +V+ G
Sbjct: 106 SDELVVSG 113
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 34.7 bits (76), Expect = 0.050
Identities = 25/97 (25%), Positives = 43/97 (44%)
Frame = +3
Query: 189 MTISENYAFTGVHHIFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVI 368
M +S+ + FT V+ + T +V+ F++ D L A D + P+ +
Sbjct: 633 MDVSKGFTFTEVNSV-RASTTKVTCCHFSS-DGKMLASAGHDKKAVLWYTDTMKPKTT-- 688
Query: 369 LDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRR 479
L+ HT +T +S S L T D + +WDA +
Sbjct: 689 LEEHTAMITDIRFSPSQLRLATSSFDKTVRVWDADNK 725
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 34.7 bits (76), Expect = 0.050
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 375 GHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPANN 551
G + +TGC +S ++L TC L G LW+ + VL VF P ++
Sbjct: 253 GDDRPLTGCSFSRDGKILATCSLSGVTKLWEMPQVTNTIAVLKDHKERATDVVFSPVDD 311
Score = 34.7 bits (76), Expect = 0.050
Identities = 26/113 (23%), Positives = 49/113 (43%)
Frame = +3
Query: 234 FDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSA 413
F+ H ++++ V F + + L S D T + D+ + + +GH+++V G +
Sbjct: 335 FEGHLDRLARVAFHPSGKY-LGTTSYDKTWRLWDINTGAELL--LQEGHSRSVYGIAFQQ 391
Query: 414 SNELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPANNNMVIRGQ 572
L +CGLD +WD R + V P+ F P ++ G+
Sbjct: 392 DGALAASCGLDSLARVWDLRTGRSIL-VFQGHIKPVFSVNFSPNGYHLASGGE 443
Score = 27.9 bits (59), Expect = 5.8
Identities = 22/79 (27%), Positives = 32/79 (40%)
Frame = +3
Query: 228 HIFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDW 407
+I H VS VK+ + L AS D V+I + + L GH V D
Sbjct: 459 YIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIW--SGRDFSLVKSLAGHESKVASLDI 516
Query: 408 SASNELLVTCGLDGALCLW 464
+A + + T D + LW
Sbjct: 517 TADSSCIATVSHDRTIKLW 535
Score = 27.5 bits (58), Expect = 7.7
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Frame = +3
Query: 216 TGVHHIFDQ-HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAV 392
TG + + H+ V + F + C D + D+ R ++ GH K V
Sbjct: 370 TGAELLLQEGHSRSVYGIAFQQDGALAASCGLDS-LARVWDLRTG--RSILVFQGHIKPV 426
Query: 393 TGCDWSASNELLVTCGLDGALCLWDAGRRRKL 488
++S + L + G D +WD R+ L
Sbjct: 427 FSVNFSPNGYHLASGGEDNQCRIWDLRMRKSL 458
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 34.7 bits (76), Expect = 0.050
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Frame = +3
Query: 174 KRKNDMTISENYAFTGVHHIFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDV-TATP 350
K+ + T G ++ H + V V F+ + C DD + + D T T
Sbjct: 268 KQTGEGTDKNESPTVGPRGVYHGHEDTVEDVAFSPTSAQEFCSVGDDSCLILWDARTGTN 327
Query: 351 PRVSVILDGHTKAVTGCDWSASNE-LLVTCGLDGALCLWDAGRRRKL 488
P V+ + H + DW+ ++ L++T D + L+D RRKL
Sbjct: 328 P-VTKVEKAHDADLHCVDWNPHDDNLILTGSADNTVRLFD---RRKL 370
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 34.7 bits (76), Expect = 0.050
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 237 DQHTEQVSVVK-FANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSA 413
D H + V+ V F D+ L SDD T + D T V L+GHT V+ +
Sbjct: 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-TKSCVQT-LEGHTHNVSAVCFHP 239
Query: 414 SNELLVTCGLDGALCLWDA 470
+++T DG + +W A
Sbjct: 240 ELPIIITGSEDGTVRIWHA 258
>At5g52250.1 68418.m06485 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to photomorphogenesis repressor PnCOP1
(GI:11127996) [Ipomoea nil]
Length = 385
Score = 34.3 bits (75), Expect = 0.067
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 363 VILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKL 488
++LDGHTK VT + S+ +VT DG+L WD R++
Sbjct: 250 IVLDGHTKTVTYARFMDSH-TIVTGSTDGSLKQWDIDNGRRV 290
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 34.3 bits (75), Expect = 0.067
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +3
Query: 312 DGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWD 467
DG + DV V L GHT+ V G WS S + L + G D + +WD
Sbjct: 196 DGKIVNNDVRIRSSIVETYL-GHTEEVCGLKWSESGKKLASGGNDNVVHIWD 246
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 34.3 bits (75), Expect = 0.067
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +3
Query: 219 GVHHIFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDV-TATPPRVSVILDGHTKAVT 395
G I++ H + V V F + + C DD + + D T T P + V H +
Sbjct: 272 GPRGIYNGHKDTVEDVAFCPSSAQEFCSVGDDSCLMLWDARTGTSPAMKV-EKAHDADLH 330
Query: 396 GCDWSA-SNELLVTCGLDGALCLWD 467
DW+ N L++T D + ++D
Sbjct: 331 CVDWNPHDNNLILTGSADNTVRVFD 355
>At3g52190.1 68416.m05731 transducin family protein / WD-40 repeat
family protein similar to St12p protein (GI:166878)
{Arabidopsis thaliana}; contains Pfam profile: PF00400
WD domain, G-beta repeat
Length = 398
Score = 34.3 bits (75), Expect = 0.067
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +3
Query: 282 DRSKLCCASDDGTVSICDVTATPPRVSVILDGHT--KAVTGCDWSASNELLVTCGLDGAL 455
D SKL DG + I + P +SVILD K++ D+S +E L T DG+
Sbjct: 133 DGSKLAVGGVDGCLRIMEW----PNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSA 188
Query: 456 CLWDA 470
+W A
Sbjct: 189 RIWKA 193
>At3g42660.1 68416.m04436 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400); AND-1
protein - Homo sapiens, EMBL:AJ006266
Length = 951
Score = 34.3 bits (75), Expect = 0.067
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = +3
Query: 246 TEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNEL 425
T + V+ F N S L A DD + + + + +L GH VTG D+ + EL
Sbjct: 104 TLPIRVLAF-NGSGSLLAAAGDDEGIKL--INTFDGSIVRVLKGHKGPVTGLDFHPNGEL 160
Query: 426 LVTCGLDGALCLWD 467
L + G + W+
Sbjct: 161 LASIDTTGTVLCWE 174
Score = 32.7 bits (71), Expect = 0.20
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 345 TPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKL-REVLDQLAAPL 521
T ++ + H +A+ W+ + + + T GLD + LWD +++ + R ++
Sbjct: 226 TGEKLFALRGDHLEAICYLTWAPNGKYIATSGLDKQVLLWDVDKKQDIDRHKFEE----R 281
Query: 522 LCCVFQPANNN 554
+CC+ N N
Sbjct: 282 ICCMSWKPNGN 292
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 34.3 bits (75), Expect = 0.067
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = +3
Query: 228 HIFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDW 407
H+F H + VS VKF +N ++L AS D T+ + DV P + GHT
Sbjct: 543 HVFSGHKKAVSYVKFLSN--NELASASTDSTLRLWDVKDNLPVRT--FRGHTNEKNFVGL 598
Query: 408 SASNELLVTCG 440
+ ++E L CG
Sbjct: 599 TVNSEYL-ACG 608
>At2g25420.1 68415.m03045 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (3 repeats)
Length = 717
Score = 34.3 bits (75), Expect = 0.067
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +3
Query: 294 LCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLW 464
L DDG++ I +++ +V L+GH + +T +S +LV+ DG LCLW
Sbjct: 484 LAVGLDDGSIFIHCLSSR--KVKEKLEGHDQKITCLAFSRCFNVLVSSDSDGKLCLW 538
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 33.5 bits (73), Expect = 0.12
Identities = 22/78 (28%), Positives = 35/78 (44%)
Frame = +3
Query: 234 FDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSA 413
+ H +V V +D +K C D V DV+ RV GH V ++
Sbjct: 56 YKSHGREVRDVH-VTSDNAKFCSCGGDRQVYYWDVSTG--RVIRKFRGHDGEVNAVKFND 112
Query: 414 SNELLVTCGLDGALCLWD 467
S+ ++V+ G D +L +WD
Sbjct: 113 SSSVVVSAGFDRSLRVWD 130
Score = 32.3 bits (70), Expect = 0.27
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 339 TATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGR 476
T P + + IL GH AV ++ +TCG D + LW+ R
Sbjct: 4 TELPTKEAHILKGHEGAVLAARFNGDGNYALTCGKDRTIRLWNPHR 49
>At2g34260.2 68415.m04192 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 296
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +3
Query: 228 HIFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDV 338
H F+ H + +S + FA+ D KL S DGT+S+C++
Sbjct: 72 HEFNAHEDYISGMTFAS-DSMKLVVTSGDGTLSVCNL 107
>At2g34260.1 68415.m04191 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 353
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +3
Query: 228 HIFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDV 338
H F+ H + +S + FA+ D KL S DGT+S+C++
Sbjct: 129 HEFNAHEDYISGMTFAS-DSMKLVVTSGDGTLSVCNL 164
>At2g19540.1 68415.m02283 transducin family protein / WD-40 repeat
family protein contains WD-40 repeats (PF00400); similar
to Glutamate-rich WD repeat protein (GRWD)
(SP:Q9BQ67)[Homo sapiens]
Length = 469
Score = 33.5 bits (73), Expect = 0.12
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 375 GHTKAVTGCDWSASNE-LLVTCGLDGALCLWD 467
GHT +V WS + E + +C +DG++ +WD
Sbjct: 267 GHTASVEDLQWSPAEENVFASCSVDGSVAVWD 298
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 375 GHTKAVTGCDWSASNELLVTCGLDGALCLWD 467
G + +TGC S ++LVTC L G LW+
Sbjct: 61 GDDRPLTGCSLSRDGKILVTCSLSGVPKLWE 91
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 363 VILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREVL 500
+I GH K V D+S + L + G D +WD R RKL ++
Sbjct: 166 LIFQGHIKQVLSVDFSPNGYHLASGGEDNQCRIWDL-RMRKLLYII 210
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 33.5 bits (73), Expect = 0.12
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 9/123 (7%)
Frame = +3
Query: 222 VHHIFD--QHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDG----HT 383
+ H+ D +H V ++F ++L +DDGTV I D+ A P + S L G
Sbjct: 105 IAHVRDLSKHKGPVRGLEFNVKSPNQLASGADDGTVCIWDL-ANPSKPSHYLKGTGSYMQ 163
Query: 384 KAVTGCDWSAS-NELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQ--PANNN 554
++ W+ +L + +G +WD + ++ L + C V Q P + N
Sbjct: 164 SEISSLSWNKGFQHVLASTSHNGTTVIWDVNNEK----IITDLKTTVRCSVLQWDPDHFN 219
Query: 555 MVI 563
++
Sbjct: 220 QIL 222
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 33.1 bits (72), Expect = 0.15
Identities = 21/76 (27%), Positives = 32/76 (42%)
Frame = +3
Query: 288 SKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWD 467
S L S D ++ D+ VS L GH + G WS+ N L + G D L +W+
Sbjct: 262 SVLSSGSRDKSILQRDIRTQEDHVSK-LKGHKSEICGLKWSSDNRELASGGNDNKLFVWN 320
Query: 468 AGRRRKLREVLDQLAA 515
+ + + AA
Sbjct: 321 QHSTQPVLRFCEHAAA 336
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 33.1 bits (72), Expect = 0.15
Identities = 26/98 (26%), Positives = 35/98 (35%)
Frame = +3
Query: 276 NNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGAL 455
+ND+S L S DGT+ S + H V A LV+C D +
Sbjct: 49 SNDQSYLFTGSRDGTLKRWAFDEDATFCSATFESHVDWVNDAAL-AGESTLVSCSSDTTV 107
Query: 456 CLWDAGRRRKLREVLDQLAAPLLCCVFQPANNNMVIRG 569
WD L Q + + C NNN+V G
Sbjct: 108 KTWDGLSDGVCTRTLRQHSDYVTCLAVAAKNNNVVASG 145
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 33.1 bits (72), Expect = 0.15
Identities = 26/98 (26%), Positives = 35/98 (35%)
Frame = +3
Query: 276 NNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGAL 455
+ND+S L S DGT+ S + H V A LV+C D +
Sbjct: 49 SNDQSYLFTGSRDGTLKRWAFDEDATFCSATFESHVDWVNDAAL-AGESTLVSCSSDTTV 107
Query: 456 CLWDAGRRRKLREVLDQLAAPLLCCVFQPANNNMVIRG 569
WD L Q + + C NNN+V G
Sbjct: 108 KTWDGLSDGVCTRTLRQHSDYVTCLAVAAKNNNVVASG 145
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 33.1 bits (72), Expect = 0.15
Identities = 23/64 (35%), Positives = 30/64 (46%)
Frame = +3
Query: 372 DGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPANN 551
DGHT VT +S + L T DG + LWD RKLR L+A F P+ +
Sbjct: 392 DGHTGEVTAISFSENGYFLATAAEDG-VRLWDL---RKLRNFKSFLSADANSVEFDPSGS 447
Query: 552 NMVI 563
+ I
Sbjct: 448 YLGI 451
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 33.1 bits (72), Expect = 0.15
Identities = 23/64 (35%), Positives = 30/64 (46%)
Frame = +3
Query: 372 DGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPANN 551
DGHT VT +S + L T DG + LWD RKLR L+A F P+ +
Sbjct: 392 DGHTGEVTAISFSENGYFLATAAEDG-VRLWDL---RKLRNFKSFLSADANSVEFDPSGS 447
Query: 552 NMVI 563
+ I
Sbjct: 448 YLGI 451
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 32.7 bits (71), Expect = 0.20
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 366 ILDGHTKAVTGCDWSASNELLVTCGLDGALCLW 464
IL+GHT V C WS S LL + D +W
Sbjct: 260 ILEGHTSEVCACAWSPSASLLASGSGDATARIW 292
Score = 31.9 bits (69), Expect = 0.36
Identities = 19/78 (24%), Positives = 31/78 (39%)
Frame = +3
Query: 234 FDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSA 413
F+ H+ V + NN +S D + +C + T P + GH V W
Sbjct: 403 FEFHSGPTLDVDWRNN--VSFATSSTDSMIYLCKIGETRPAKT--FTGHQGEVNCVKWDP 458
Query: 414 SNELLVTCGLDGALCLWD 467
+ LL +C D +W+
Sbjct: 459 TGSLLASCSDDSTAKIWN 476
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Frame = +3
Query: 228 HIFDQHTEQVSVVKFA------NNDRSKLCCASD--DGTVSICDVTATPPRVSVILDGHT 383
H +HT+++ ++++ NN +L AS D TV + D A ++ +GH
Sbjct: 484 HDLREHTKEIYTIRWSPTGPGTNNPNKQLTLASASFDSTVKLWD--AELGKMLCSFNGHR 541
Query: 384 KAVTGCDWSASNELLVTCGLDGALCLW 464
+ V +S + E + + LD ++ +W
Sbjct: 542 EPVYSLAFSPNGEYIASGSLDKSIHIW 568
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 32.7 bits (71), Expect = 0.20
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 375 GHTKAVTGCDWSASNELLVTCGLDGALCLWD 467
GHT+ V G WS S + L + G D + +WD
Sbjct: 234 GHTEEVCGLKWSESGKKLASGGNDNVVHIWD 264
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 32.7 bits (71), Expect = 0.20
Identities = 23/86 (26%), Positives = 35/86 (40%)
Frame = +3
Query: 231 IFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWS 410
IF H V + + + R + +DGT+ + D++ R L GH V +S
Sbjct: 536 IFIGHRSMVLSLAMSPDGRY-MASGDEDGTIMMWDLSTA--RCITPLMGHNSCVWSLSYS 592
Query: 411 ASNELLVTCGLDGALCLWDAGRRRKL 488
LL + D + LWD KL
Sbjct: 593 GEGSLLASGSADCTVKLWDVTSSTKL 618
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 32.7 bits (71), Expect = 0.20
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 348 PPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRR 482
PP +L GH +V + S LL T DG L +WD + R
Sbjct: 6 PPDPVAVLRGHRHSVMDVSFHPSKSLLFTGSADGELRIWDTIQHR 50
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 32.7 bits (71), Expect = 0.20
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = +3
Query: 366 ILDGHTKAVTGCDWSASNELLVTCGLDGALCLWD 467
IL GH KAV+ + NE LVT D L LWD
Sbjct: 877 ILSGHNKAVSYAKF-LDNETLVTASTDNTLKLWD 909
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 32.3 bits (70), Expect = 0.27
Identities = 26/116 (22%), Positives = 47/116 (40%)
Frame = +3
Query: 225 HHIFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCD 404
+ + H V V F + C S D T+ I DV +++ L GH + V G
Sbjct: 169 YRVIQGHLGWVRSVAF-DPSNEWFCTGSADRTIKIWDVATGVLKLT--LTGHIEQVRGLA 225
Query: 405 WSASNELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPANNNMVIRGQ 572
S + + + G D + WD + + +R L+ + C P + ++ G+
Sbjct: 226 VSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG-VYCLALHPTLDVLLTGGR 280
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 32.3 bits (70), Expect = 0.27
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 369 LDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLRE 494
L GH AVT +S ++E ++T DG++ +W+ R L E
Sbjct: 285 LKGHKSAVTWLCFSPNSEQIITASKDGSIRVWNINVRYHLDE 326
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 32.3 bits (70), Expect = 0.27
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +3
Query: 369 LDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPAN 548
L GH A+ WS S +LL++ +D + LWD + L+ L + C F P +
Sbjct: 502 LKGHLDAILDLSWSKS-QLLLSSSMDKTVRLWDIETKTCLK--LFAHNDYVTCIQFSPVD 558
Query: 549 NNMVIRG 569
N + G
Sbjct: 559 ENYFLSG 565
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 32.3 bits (70), Expect = 0.27
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +3
Query: 243 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNE 422
HTE ++ + N++ S S DG+V I ++ +V L+ HT +V +S S+
Sbjct: 241 HTEGLTCLDI-NSNSSLAISGSKDGSVHIVNIVTG--KVVSSLNSHTDSVECVKFSPSSA 297
Query: 423 ---LLVTCGLDGALCLWD 467
L T G+D L +WD
Sbjct: 298 TIPLAATGGMDKKLIIWD 315
Score = 30.7 bits (66), Expect = 0.82
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = +3
Query: 243 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNE 422
H + VS + F+ D L DG V I D A+ + +LDG + W
Sbjct: 112 HKDSVSCLAFSY-DGQLLASGGLDGVVQIFD--ASSGTLKCVLDGPGAGIEWVRWHPRGH 168
Query: 423 LLVTCGLDGALCLWDAGRRRKL 488
+++ D +L +W+A + L
Sbjct: 169 IVLAGSEDCSLWMWNADKEAYL 190
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 369 LDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREVLD 503
L GH +V+ +S +LL + GLDG + ++DA L+ VLD
Sbjct: 109 LPGHKDSVSCLAFSYDGQLLASGGLDGVVQIFDAS-SGTLKCVLD 152
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 31.9 bits (69), Expect = 0.36
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Frame = +3
Query: 222 VHHIFDQHTEQVSVVKFANNDR-----SKLCCASDDGTV-------SICDVTATPPRVSV 365
VH++FD T ++ A+ +R S+ C + DD V S+ + + +
Sbjct: 422 VHNVFDTRTLEICGTLRASGNRLASNWSRSCISPDDDYVAAGSADGSVHVWSLSKGNIVS 481
Query: 366 ILDGHTKAVTGCDWSASNELLVTCGLDGALCLW 464
IL T + C WS + L + +G +C W
Sbjct: 482 ILKEQTSPILCCSWSGIGKPLASADKNGYVCTW 514
Score = 29.5 bits (63), Expect = 1.9
Identities = 28/118 (23%), Positives = 48/118 (40%)
Frame = +3
Query: 222 VHHIFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGC 401
V H HT++V V + + A+ D T+ + D+ +V+ + A+ C
Sbjct: 307 VRHTLTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKLWDLHKGYCTNTVLFTSNCNAI--C 364
Query: 402 DWSASNELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPANNNMVIRGQR 575
S + + +DG L LWD + L EV +A + V N N ++ R
Sbjct: 365 -LSIDGLTVFSGHMDGNLRLWDIQTGKLLSEVAGHSSA--VTSVSLSRNGNRILTSGR 419
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 31.9 bits (69), Expect = 0.36
Identities = 20/62 (32%), Positives = 25/62 (40%)
Frame = +3
Query: 282 DRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCL 461
D L DG + DV V L GHT+ V G WS S + G D + +
Sbjct: 220 DNHILTTGGMDGKIVNNDVRIRSSIVETYL-GHTEEVCGLKWSESGNKQASGGNDNVVHI 278
Query: 462 WD 467
WD
Sbjct: 279 WD 280
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 31.9 bits (69), Expect = 0.36
Identities = 22/76 (28%), Positives = 32/76 (42%)
Frame = +3
Query: 288 SKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWD 467
S L S D ++ D+ VS L GH V G WS N L + G D L +W+
Sbjct: 305 SVLSSGSRDKSILQRDIRCQEDHVSK-LAGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 363
Query: 468 AGRRRKLREVLDQLAA 515
+ + + + AA
Sbjct: 364 QHSTQPVLKYSEHTAA 379
>At3g21060.1 68416.m02662 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Retinoblastoma-binding protein 5 (RBBP-5)
[Homo sapiens](RBQ-3)
Length = 547
Score = 31.9 bits (69), Expect = 0.36
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Frame = +3
Query: 231 IFDQHTEQVSVVKFANNDRSKLCCAS-DDGTVSICDVTATPPRVSVILDGHTKAVTGCDW 407
+ +++ E + A N R L A DG I D + + + A+T W
Sbjct: 16 VIEEYLEHGVIKCVAFNHRGSLLAAGCADGGCVIWDFETRGIAKEIRDNDCSAAITSVSW 75
Query: 408 SASNELLVTCGLDGALCLWDAGRRRKL-REVLDQ 506
S L+ D +L LWD K+ R +L Q
Sbjct: 76 SKYGHRLLVSAADKSLTLWDVSTGEKIARTILQQ 109
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 31.9 bits (69), Expect = 0.36
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +3
Query: 375 GHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPANNN 554
GHT AVT +S E + + DG++ +W+ R L+ + Q ++C + P +
Sbjct: 421 GHTGAVTSISTDSSGEWIASGSTDGSVRMWEVETGRCLK--VWQFDEAIMCVAWNPLSRL 478
Query: 555 MVI 563
V+
Sbjct: 479 PVL 481
>At2g31300.1 68415.m03821 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
identical to putative ARP2/3 protein complex subunit p41
(GI:4432825)[Arabidopsis thaliana]; similar to ARP2/3
complex 41 kDa subunit (P41-ARC) (Actin-related protein
2/3 complex subunit 1B) (SP:Q9WV32) [Mus musculus]
Length = 378
Score = 31.9 bits (69), Expect = 0.36
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 366 ILDGHTKAVTGCDWSASNELLVTCGLDGALCLWD-AGRRRKLREVLDQLAAPLLCCVFQP 542
+L H + V+G DWS+ + +VT D +W G V+ +L LC + P
Sbjct: 50 VLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSLEGAEWVPTLVILRLNRAALCVQWSP 109
Query: 543 ANNNMVI 563
N +
Sbjct: 110 KENKFAV 116
>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 31.9 bits (69), Expect = 0.36
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 366 ILDGHTKAVTGCDWSASNELLVTCGLDGALCLWD-AGRRRKLREVLDQLAAPLLCCVFQP 542
+L H + V+G DWS+ + +VT D +W G V+ +L LC + P
Sbjct: 50 VLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSLEGAEWVPTLVILRLNRAALCVQWSP 109
Query: 543 ANNNMVI 563
N +
Sbjct: 110 KENKFAV 116
>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 31.9 bits (69), Expect = 0.36
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 366 ILDGHTKAVTGCDWSASNELLVTCGLDGALCLWD-AGRRRKLREVLDQLAAPLLCCVFQP 542
+L H + V+G DWS+ + +VT D +W G V+ +L LC + P
Sbjct: 50 VLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSLEGAEWVPTLVILRLNRAALCVQWSP 109
Query: 543 ANNNMVI 563
N +
Sbjct: 110 KENKFAV 116
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 31.5 bits (68), Expect = 0.47
Identities = 19/86 (22%), Positives = 34/86 (39%)
Frame = +3
Query: 234 FDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSA 413
F H+ V+ +K L +D V++ + P + L GH+ + + A
Sbjct: 105 FVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK--PNAILSLYGHSSGIDSVTFDA 162
Query: 414 SNELLVTCGLDGALCLWDAGRRRKLR 491
S L+ G + LWD + +R
Sbjct: 163 SEGLVAAGAASGTIKLWDLEEAKVVR 188
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 31.5 bits (68), Expect = 0.47
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 384 KAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREVL 500
KA+T + A LL++ DG +C+WD R +R ++
Sbjct: 264 KAITCLAYCADGNLLISGSEDGVVCVWDPKSLRHVRTLI 302
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 31.1 bits (67), Expect = 0.62
Identities = 19/86 (22%), Positives = 34/86 (39%)
Frame = +3
Query: 234 FDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSA 413
F H+ V+ +K L +D V++ + P + L GH+ + + A
Sbjct: 12 FVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK--PNAILSLYGHSSGIDSVTFDA 69
Query: 414 SNELLVTCGLDGALCLWDAGRRRKLR 491
S L+ G + LWD + +R
Sbjct: 70 SEVLVAAGAASGTIKLWDLEEAKIVR 95
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 31.1 bits (67), Expect = 0.62
Identities = 19/86 (22%), Positives = 34/86 (39%)
Frame = +3
Query: 234 FDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSA 413
F H+ V+ +K L +D V++ + P + L GH+ + + A
Sbjct: 12 FVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK--PNAILSLYGHSSGIDSVTFDA 69
Query: 414 SNELLVTCGLDGALCLWDAGRRRKLR 491
S L+ G + LWD + +R
Sbjct: 70 SEVLVAAGAASGTIKLWDLEEAKIVR 95
>At5g19920.1 68418.m02370 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to TipD protein (SP:O15736, PIR:T08602)
[Dictyostelium discoideum]; related to WD-repeat protein
RBAP1 (GI:9716495) [Zea mays]
Length = 656
Score = 31.1 bits (67), Expect = 0.62
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 282 DRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGAL 455
D + S D + I D+ P S+ + H K V +W +S LLV+ D A+
Sbjct: 593 DGLHISSGSADPVIHIFDIRYNAPSPSLSMKAHKKRVFKAEWHSSYPLLVSISSDLAI 650
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 31.1 bits (67), Expect = 0.62
Identities = 21/92 (22%), Positives = 41/92 (44%)
Frame = +3
Query: 294 LCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAG 473
L S D + D+ VS ++ GH V G WS + L + G D L +W+
Sbjct: 270 LSSGSRDRNILQHDIRVQSDFVSKLV-GHKSEVCGLKWSHDDRELASGGNDNQLLVWNNH 328
Query: 474 RRRKLREVLDQLAAPLLCCVFQPANNNMVIRG 569
++ + ++ + AA + + P ++++ G
Sbjct: 329 SQQPILKLTEHTAA-VKAITWSPHQSSLLASG 359
>At1g80710.1 68414.m09470 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to damage-specific DNA-binding protein 2 (DDB2)
[Mus musculus]
Length = 516
Score = 31.1 bits (67), Expect = 0.62
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +3
Query: 279 NDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASN-ELLVTCGLDGAL 455
ND L D G ++ D+ A L H + + D++ N ++ T DG
Sbjct: 316 NDEQSLYFGQDYGVFNVWDLRAGKSVFHWEL--HERRINSIDFNPQNPHVMATSSTDGTA 373
Query: 456 CLWD 467
CLWD
Sbjct: 374 CLWD 377
>At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis};
Length = 466
Score = 30.7 bits (66), Expect = 0.82
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 312 DGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWD 467
DG + DV V L GHT+ V G WS S + L + G + +WD
Sbjct: 227 DGKIVNNDVRIRSSIVGTYL-GHTEEVCGLKWSESGKKLASGGNYNVVHIWD 277
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 30.7 bits (66), Expect = 0.82
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 369 LDGHTKAVTGCDWSASNELLVTCGLDGALCLWD 467
LDGH K VTG + ++ L T D + +WD
Sbjct: 140 LDGHQKVVTGIALPSGSDKLYTASKDETVRIWD 172
>At5g45760.1 68418.m05625 transducin family protein / WD-40 repeat
family protein
Length = 360
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = +3
Query: 234 FDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSA 413
++ + ++V+ V N S L A D G V I D+ + GHT + +
Sbjct: 101 YNYNKDEVNQV-VCNGRSSFLASADDSGDVKIIDL-GQKCLYKTLRAGHTSICSSVQFIP 158
Query: 414 SNEL-LVTCGLDGALCLWDAGRRRKLREVLD 503
++T GLD L LWD + R ++++D
Sbjct: 159 WRPWEVITGGLDSKLVLWDFSKGRS-QKIID 188
>At3g50590.1 68416.m05533 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); some
similarity to s-tomosyn isoform (GI:4689231)[Rattus
norvegicus]; contains non-consensus AT-AC splice sites
at intron 18
Length = 1606
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 315 GTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLW 464
GT+ DV+ P + I ++ +T W +LVT DG+L +W
Sbjct: 224 GTLLAWDVSTERPNMIGITQVGSQPITSISWLPMLRVLVTVSKDGSLQVW 273
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 378 HTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREVLDQL 509
HT +T +S+ +L++ DG+L +WD + ++ +V + L
Sbjct: 372 HTDDITSVKFSSDGRILLSRSFDGSLKVWDLRQMKEALKVFEGL 415
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Frame = +3
Query: 225 HHIFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVIL--DGHTKAVTG 398
H +H+ V+ ++++ D +K S D I D T +V + DGH ++
Sbjct: 44 HSSHREHSNFVNCIRYSP-DGTKFITVSSDKKGMIYD-GKTGDKVGELASEDGHKGSIYA 101
Query: 399 CDWSASNELLVTCGLDGALCLWDAGRRRKLREVLDQLA 512
WS ++ ++T D + +W+ + V+ L+
Sbjct: 102 VSWSPDSKRVLTVSADKSAKVWEVAEDGTIGSVIKTLS 139
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = +3
Query: 234 FDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSA 413
FD H++ V+ + F+ D S+L S D T I + + ++ GHT V +++
Sbjct: 301 FDAHSQGVTSLSFSR-DGSQLLSTSFDQTARIHGLKSG--KLLKEFRGHTSYVNHAIFTS 357
Query: 414 SNELLVTCGLDGALCLWDA 470
++T D + +WD+
Sbjct: 358 DGSRIITASSDCTVKVWDS 376
>At5g23730.1 68418.m02782 transducin family protein / WD-40 repeat
family protein contains similarity to photomorphogenesis
repressor protein; contains Pfam PF00400: WD domain,
G-beta repeat (5 copies)
Length = 243
Score = 29.9 bits (64), Expect = 1.4
Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 15/122 (12%)
Frame = +3
Query: 171 TKRKNDMTISENYAFTGVHHIFDQHT---EQVSVVKFANNDRSKLCCASDDGTVSICDVT 341
T+ T+ + + G ++D E V VV+ A RS +CC D +
Sbjct: 28 TRHGGASTVGASGSDDGTMQVWDPRCPPEESVGVVRPAGICRSAVCCVEFDPSGGPAVAV 87
Query: 342 ATPPRVSVILD------------GHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRK 485
R + D GHTK V+ + +VT G DG L LW R
Sbjct: 88 GCADRKGYVYDIRKLVDPALTLQGHTKTVSYVRF-LDGGTVVTAGTDGCLKLWSVEDGRV 146
Query: 486 LR 491
+R
Sbjct: 147 IR 148
>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400); low
similarity (47%) to Agamous-like MADS box protein AGL5
(SP:P29385) {Arabidopsis thaliana}
Length = 892
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = +3
Query: 252 QVSVVKFA-NNDRSKLCCASDDGTVSI----CDVTATPPRVSVILDGHTKAVTGCDWSAS 416
QVS + F +N + + A G+ S C+++ V + H + VTG WS
Sbjct: 388 QVSTLSFVVSNHYNAMHLAIGKGSGSFEVWKCEISTRKFEQIVSTNAHNQVVTGLAWSYD 447
Query: 417 NELLVTCGLDGALCLW 464
L +C D + W
Sbjct: 448 GRCLYSCSQDNYVRSW 463
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +3
Query: 240 QHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILD-GHTKAVTGCDWSAS 416
+H+ V+ V+FA D SK S D I D + D GH ++ WS
Sbjct: 185 EHSNFVNCVRFAP-DGSKFITVSSDKKGIIYDGKTCEILGELSSDDGHKGSIYAVSWSPD 243
Query: 417 NELLVTCGLDGALCLWD 467
+ ++T D + +WD
Sbjct: 244 GKQVLTVSADKSAKIWD 260
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 29.9 bits (64), Expect = 1.4
Identities = 28/117 (23%), Positives = 46/117 (39%)
Frame = +3
Query: 225 HHIFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCD 404
+ + H V V F + C S D T+ I DV +++ L GH V G
Sbjct: 163 YRVLQGHLGWVRSVAF-DPSNEWFCTGSADRTIKIWDVATGVLKLT--LTGHIGQVRGLA 219
Query: 405 WSASNELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPANNNMVIRGQR 575
S + + + G D + WD + + +R L + C P ++V+ G R
Sbjct: 220 VSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLHG-VYCLALHP-TLDVVLTGGR 274
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 375 GHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLRE 494
GHT+ ++ ++S +V+ GLD + +WD + L E
Sbjct: 89 GHTRGISTIEFSPDGRWVVSGGLDNVVKVWDLTAGKLLHE 128
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 369 LDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREV-LDQLAAPLL 524
L+GH K + G ++ L + +DG L +WD + + + LD A L+
Sbjct: 127 LEGHNKELKGIALPEGSDKLFSVSIDGTLRVWDCNSGQCVHSINLDAEAGSLI 179
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = +3
Query: 390 VTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPANNNMVIRG 569
V DW+ +V+ DG L +W+A +K + A ++ C F P ++ G
Sbjct: 6 VYSLDWTPERNRIVSASQDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSPNGQSVACGG 64
>At3g56900.1 68416.m06329 aladin-related / adracalin-related weak
similarity to SP|Q9NRG9 Aladin (Adracalin) (GL003) {Homo
sapiens}; non-consensus AT-AC splice sites at intron 6
Length = 447
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +3
Query: 240 QHTEQVSVVKFANNDRSKLCCASDDGTVSICDVT---ATPPRVSVILDGHTKAVTGCDWS 410
Q+ EQ+S + ++ R + D + +I DV+ TP R L G ++ WS
Sbjct: 210 QNDEQISALSWSPCGRYLASASYDSSSFTIWDVSQGAGTPIRRG--LGG----ISMLKWS 263
Query: 411 ASNELLVTCGLDGALCLWD 467
+ + DG CLW+
Sbjct: 264 PTGDYFFAARFDGTFCLWE 282
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 369 LDGHTKAVTGCDWSASNELLVTCGLDGALCLWD 467
L GHT V +WS + +L + LD + +W+
Sbjct: 114 LRGHTADVVDLNWSPDDSMLASGSLDNTVHIWN 146
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/74 (25%), Positives = 31/74 (41%)
Frame = +3
Query: 243 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNE 422
HT V + ++ +D S L S D TV I ++ + +L GH V G W
Sbjct: 117 HTADVVDLNWSPDD-SMLASGSLDNTVHIWNMRTG--MCTTVLRGHLSLVKGVTWDPIGS 173
Query: 423 LLVTCGLDGALCLW 464
+ + D + +W
Sbjct: 174 FIASQSDDKTVIIW 187
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/86 (22%), Positives = 34/86 (39%)
Frame = +3
Query: 234 FDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSA 413
F H+ V+ + DD V++ + P + L GHT AV + +
Sbjct: 11 FLAHSANVNCLSIGKKTSRLFITGGDDYKVNLWAIGK--PTSLMSLCGHTSAVDSVAFDS 68
Query: 414 SNELLVTCGLDGALCLWDAGRRRKLR 491
+ L++ G + LWD + +R
Sbjct: 69 AEVLVLAGASSGVIKLWDVEEAKMVR 94
>At1g19320.1 68414.m02402 pathogenesis-related thaumatin family
protein similar to SP:P28493 Pathogenesis-related
protein 5 precursor (PR-5) from [Arabidopsis thaliana],
thaumatin-like protein [Arabidopsis thaliana]
GI:2435406; contains Pfam profile PF00314: Thaumatin
family
Length = 247
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Frame = +1
Query: 439 GWT----ARCVCG-TRGGAASCARCSTSWPRRCSAACSSPPTTTWSFAGNAKGMGRSIEH 603
GW+ AR C G+ C +C+ A +PP T F + G +++
Sbjct: 70 GWSGRFWARTYCNFDASGSGKCGTGDCGSKLKCAGAGGAPPATLAEFTIGSSGKKNAVQD 129
Query: 604 FY 609
FY
Sbjct: 130 FY 131
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +3
Query: 354 RVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREVLD 503
+V L H K V WS + L++ +D + +WD + + ++LD
Sbjct: 44 KVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDV-NKGSVHQILD 92
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +3
Query: 354 RVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREVLD 503
+V L H K V WS + L++ +D + +WD + + ++LD
Sbjct: 103 KVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDV-NKGSVHQILD 151
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +3
Query: 354 RVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREVLD 503
+V L H K V WS + L++ +D + +WD + + ++LD
Sbjct: 103 KVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDV-NKGSVHQILD 151
>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3
Pfam PF00400: WD domain, G-beta repeats;
Length = 1327
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 408 SASNELLVTCGLDGALCLWDAGRRRKLREVLDQLA 512
S+ LLV+ G DG L LW A RE++ +L+
Sbjct: 144 SSGEALLVSGGSDGLLVLWSADHGADSRELVPKLS 178
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 372 DGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREV 497
DG AV S S L+T G D L +WD ++LR +
Sbjct: 204 DGGVVAVELSRVSGSAPQLITIGADKTLAIWDTMTFKELRRI 245
>At5g19050.1 68418.m02265 expressed protein
Length = 361
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 478 AASCARCSTSWPRRCSAACSSPPTTTWSFAGNAKGMG 588
+A+ A STS AA SS TTT F+G +G G
Sbjct: 9 SAAAAAASTSGSSSSPAAASSSSTTTSWFSGIVRGRG 45
>At4g34280.1 68417.m04873 transducin family protein / WD-40 repeat
family protein similar to TUPA (GI:11066216) [Emericella
nidulans]; similar to damage-specific DNA binding
protein 2, Homo sapiens ,PIR2:I38909; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies,1
weak)|19797453|gb|AU229277.1|AU229277
Length = 783
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 237 DQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPR 356
+ H E ++VVKF+N+ +S D V + D+ P R
Sbjct: 580 NMHQEHINVVKFSNHSPFLFATSSFDKDVKLWDLRQEPSR 619
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 375 GHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKL 488
GH+ AV CD S + L+T D LWD ++L
Sbjct: 77 GHSGAVWCCDISRDSSRLITGSADQTAKLWDVKSGKEL 114
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 369 LDGHTKAVTGCDWSASNELLVTCGLDGALCLWD 467
LDGH K V+G + ++ L T D L +WD
Sbjct: 147 LDGHEKLVSGIALPSGSDKLYTGSKDETLRVWD 179
>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
protein contains G-protein beta WD-40 repeats
Length = 539
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 369 LDGHTKAVTGCDWSASNELLVTCGLDGALCLWD 467
L GHT+AV AS +L+ T G D + +WD
Sbjct: 158 LYGHTEAVRTVFLLASAKLVFTSGYDSIVRMWD 190
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 375 GHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKL 488
GH AV CD S + L+T D LWD ++L
Sbjct: 50 GHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKSGKEL 87
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 363 VILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKL 488
+++ GH + +T ++ +LL +C D LW A +L
Sbjct: 4 ILMKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERL 45
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 375 GHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKL 488
GH AV CD S + L+T D LWD ++L
Sbjct: 50 GHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKSGKEL 87
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 363 VILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKL 488
+++ GH + +T ++ +LL +C D LW A +L
Sbjct: 4 ILMKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERL 45
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 375 GHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKL 488
GH AV CD S + L+T D LWD ++L
Sbjct: 50 GHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKSGKEL 87
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 363 VILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKL 488
+++ GH + +T ++ +LL +C D LW A +L
Sbjct: 4 ILMKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERL 45
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 28.3 bits (60), Expect = 4.4
Identities = 22/67 (32%), Positives = 28/67 (41%)
Frame = +3
Query: 369 LDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPAN 548
L GHT V WS SN LL++ D + LW G + L + + C F P N
Sbjct: 268 LYGHTGDVLDLAWSDSN-LLLSASKDKTVRLWRTGCDQCLH--VFHHNNYVTCVEFNPVN 324
Query: 549 NNMVIRG 569
N G
Sbjct: 325 KNNFASG 331
>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 27.9 bits (59), Expect = 5.8
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Frame = +3
Query: 249 EQVSVVKFANNDRSKLCCASDD-----GTVSICDVTATP-PRVSVILDGHTKAVTGCDWS 410
E V V F ++ R CC SD G C V ++ VI + + + C +
Sbjct: 268 EVVGPVLFGHSVRVWDCCISDSLIVTAGEDCTCRVWGVDGTQLEVIKEHIGRGIWRCLYD 327
Query: 411 ASNELLVTCGLDGAL 455
++ LLVT G D A+
Sbjct: 328 PNSSLLVTAGFDSAI 342
>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 27.9 bits (59), Expect = 5.8
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Frame = +3
Query: 249 EQVSVVKFANNDRSKLCCASDD-----GTVSICDVTATP-PRVSVILDGHTKAVTGCDWS 410
E V V F ++ R CC SD G C V ++ VI + + + C +
Sbjct: 268 EVVGPVLFGHSVRVWDCCISDSLIVTAGEDCTCRVWGVDGTQLEVIKEHIGRGIWRCLYD 327
Query: 411 ASNELLVTCGLDGAL 455
++ LLVT G D A+
Sbjct: 328 PNSSLLVTAGFDSAI 342
>At3g26640.1 68416.m03329 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to ATAN11 (GI:2290528) [Arabidopsis thaliana]
(Genes Dev. 11 (11), 1422-1434 (1997)); contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies)
Length = 346
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 240 QHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILD 374
+H V+ + +A + S +C A DD I D+++ V LD
Sbjct: 265 RHQASVNAIAWAPHSSSHICSAGDDSQALIWDISSMGQHVEGGLD 309
>At3g08850.1 68416.m01029 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies, 1 weak)
Length = 1344
Score = 27.9 bits (59), Expect = 5.8
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 13/111 (11%)
Frame = +3
Query: 204 NYAFTGVHHIFDQHT---EQVSVVKFANN-DRSKLCCASDDGTVSICDVTATPPRVSVI- 368
NY + + FD H + +S + N D S L AS DG+V I AT + ++
Sbjct: 1055 NYEEATLLNGFDNHDFPDKGISKLCLINELDDSLLLVASCDGSVRIWKNYATKGKQKLVT 1114
Query: 369 ----LDGHTKAVTGC----DWSASNELLVTCGLDGALCLWDAGRRRKLREV 497
+ GH DW + L G + LWD + + +R V
Sbjct: 1115 GFSSIQGHKPGARDLNAVVDWQQQSGYLYASGETSTVTLWDLEKEQLVRSV 1165
>At1g64350.1 68414.m07292 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to nuclear pore protein SEH1 (SP:P53011)
[Saccharomyces cerevisiae]
Length = 326
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 369 LDGHTKAVTGCDWSASNELLVTCGLDGALCLWDA 470
L GH V +W S L + G DG + LW +
Sbjct: 276 LSGHQGEVWQMEWDMSGMTLASTGSDGMVKLWQS 309
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +1
Query: 454 CVCGTRGGAASCARCSTSWPRRCSAACSSP 543
C CG G C +CS + C + C P
Sbjct: 317 CSCGCGCGDCGCFKCSCPTLKGCFSCCKKP 346
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/65 (29%), Positives = 25/65 (38%)
Frame = +3
Query: 375 GHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPANNN 554
GHT V WS N LL + +D + LW G L + + F P N N
Sbjct: 326 GHTGEVLDISWSKDNYLL-SASMDKTVRLWKVGSNDCLGVFAHN--SYVTSVQFNPVNEN 382
Query: 555 MVIRG 569
+ G
Sbjct: 383 YFMSG 387
>At4g22760.1 68417.m03286 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 889
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 602 CSILRPMPLALPANDHVVVGGLEHAAEQR 516
CS+ MPL PA+ ++++GG + E +
Sbjct: 490 CSLFSAMPLKSPASWNILIGGYVNCREMK 518
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 369 LDGHTKAVTGCDWSA-SNELLVTCGLDGALCLWD 467
L H V G +++A S+ LL + DG +C+WD
Sbjct: 118 LSVHKGPVRGLEFNAISSNLLASGADDGEICIWD 151
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 369 LDGHTKAVTGCDWSA-SNELLVTCGLDGALCLWD 467
L H V G +++A S+ LL + DG +C+WD
Sbjct: 118 LSVHKGPVRGLEFNAISSNLLASGADDGEICIWD 151
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/71 (23%), Positives = 31/71 (43%)
Frame = +3
Query: 255 VSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVT 434
++V A++ S + DG++ I D V+ + H AVT ++ +L +
Sbjct: 66 LAVTSIASSASSLVAVGYADGSIRIWDTEKGTCEVN--FNSHKGAVTALRYNKVGSMLAS 123
Query: 435 CGLDGALCLWD 467
D + LWD
Sbjct: 124 GSKDNDIILWD 134
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +3
Query: 423 LLVTCGLDGALCLW---DAGRRRK-LREVLDQLAAPLLCCVFQPANNNMVIRG 569
+L+TC LDGA+ LW D G+ +K +++V D + CV N V+ G
Sbjct: 266 VLMTCCLDGAVRLWCEVDGGKTKKGMKDVPDHKKS---FCVAAVIEINQVLDG 315
>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 544
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +3
Query: 243 HTEQVSVVKFA-NNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASN 419
H Q ++ A +ND + L DG + I D + ++ + + A+ C WS
Sbjct: 300 HIGQGAINSIAFSNDGAYLATVGRDGYLRIFDFSTQ--KLVCGVKSYYGALLCCAWSMDG 357
Query: 420 ELLVTCGLDGALCLWDAGRRR 482
+ L+T G D + +W R+
Sbjct: 358 KYLLTGGEDDLVQVWSMEDRK 378
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 375 GHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLR 491
GH +T +S + L T LDG + LWD + + R
Sbjct: 394 GHNGEITSISFSENGYFLATAALDG-VRLWDLRKLKNFR 431
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,707,226
Number of Sequences: 28952
Number of extensions: 216651
Number of successful extensions: 1010
Number of sequences better than 10.0: 147
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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