Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30617
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    31   0.15 
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb...    29   0.61 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   4.3  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.3  
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s...    26   5.7  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    26   5.7  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   7.6  
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces...    25   7.6  
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    25   7.6  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   7.6  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   7.6  
SPCC1682.05c |||signal recognition particle subunit |Schizosacch...    25   10.0 

>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -2

Query: 584 MLSIFCE*LVLLFDTSK*VINVIHTYTTLADLQI 483
           +LS FC    +LF T+K ++  +H  +T+ DLQ+
Sbjct: 592 VLSFFCTERFVLFTTTKNLLKFVHLVSTVDDLQV 625


>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 415

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 387 P*HYNVIYKKYGKRNCKPVYKKKNNW 310
           P H+N IY+KY +   K V    +NW
Sbjct: 385 PNHHNAIYRKYSENRMKRVSAFAHNW 410


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 487 KYLFETNNEYIYFIMYDFIYLCPDIF 410
           KYLF +N  +I FI+  F+ LC   +
Sbjct: 513 KYLFYSNFIWISFIVAQFVTLCTQTY 538


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 345 NCKPVYKKKNNWH 307
           +C P+Y K+ NWH
Sbjct: 75  SCSPIYIKEGNWH 87


>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
           subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 153 TNGLTNEGTRVRSVEV 106
           TNG+T EG  VRSV+V
Sbjct: 95  TNGITIEGVNVRSVKV 110


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -1

Query: 213 YSKKEYYP*LIYKLYLQFV*TNGLTNEGTRVRSVEVLLI*SNAWRRQTSVLQIIAFVPNA 34
           +S+K YY   ++K  L+    + L N+   +  V +L      WRR+ +  + I F  + 
Sbjct: 362 FSQKAYYSIALHKWKLRIEELSDLMNKADDLYEVNLLQRMLVLWRRKATTYEKIDFWMDG 421

Query: 33  QD 28
            D
Sbjct: 422 HD 423


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 107 YYLFNRTHGGVRRPCSKLSHLCP-MHK 30
           +Y+ +R +G + RP   +SHL P +HK
Sbjct: 782 FYMKSRENGTIPRPLYVISHLRPLLHK 808


>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 177 CILIKDNTLFLN--TKYKIIETLSNKCTYR 260
           C+   DN + L    K+K IETL N  TY+
Sbjct: 275 CMAASDNVIRLGFTPKFKDIETLVNNLTYQ 304


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 325 FVNWLAISFPIFFIYNIVMLR 387
           FV W ++  PIFFI  I++ R
Sbjct: 25  FVFWFSVLIPIFFIALIIIKR 45


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 192 DNTLFLNTKYKIIETLSNKCTYRVVLYSLCM-VFELFVVCANCFFFCKLACN 344
           DN+L  N   K+ ET+S+  ++    Y L      +F    N + F   AC+
Sbjct: 430 DNSLLDNRFQKLSETISSTSSFLSEYYRLSSEALSIFKAYKNRYSFVNTACD 481


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 177 CILIKDNTLFLNTKYKIIETLSNKCTYRVVLYSLCMVFELFVVCANCF 320
           C+  K+   F N K+  +E     C Y + LYS+C+++  FV     F
Sbjct: 127 CMWFKNCVGFRNHKFFFLE-----CFY-LNLYSICVLYSTFVAITKTF 168


>SPCC1682.05c |||signal recognition particle subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +1

Query: 358 FFIYNIVMLRLRRDLS 405
           +  YN+V+LR++RDL+
Sbjct: 361 YLAYNVVLLRIQRDLA 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,981
Number of Sequences: 5004
Number of extensions: 54612
Number of successful extensions: 133
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)