Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30617
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   3.4  
SB_9274| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_718| Best HMM Match : RhoGAP (HMM E-Value=0)                        28   6.0  

>SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1238

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 298 LLSVPIVFFFVNWLAISFPIFFIYNIVMLR 387
           L +VPI+  FV W  ++  I F+  I++ R
Sbjct: 219 LFAVPIIVLFVGWQGLACFILFVLMIILFR 248


>SB_9274| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1230

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 295  FLLSVPIVFFFVNWLAISFPIFFIYNI 375
            F+LS+PI+  F  WL + FP    + +
Sbjct: 1030 FVLSLPIMLLFTPWLMMKFPCLMRFRL 1056


>SB_718| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 598

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +3

Query: 177 CILIKDNTL-FLNTKYKIIETLSNKCTYRVVLYSLCMVFEL--FVVCANCFFFCKLACNF 347
           C L   +T  FL+  Y  ++   + C +  VLY          FV    C    K AC+F
Sbjct: 152 CTLKAKHTCDFLSVLYCTLKA-KHTCDFVSVLYCTLKAKHACDFVSVLYCTLKAKHACDF 210

Query: 348 VSHIFYI*HCNVKV 389
           VS ++Y+ +C ++V
Sbjct: 211 VSVLYYL-YCTLEV 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,022,339
Number of Sequences: 59808
Number of extensions: 373613
Number of successful extensions: 937
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)