Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30617
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41250.1 68418.m05013 exostosin family protein contains Pfam ...    27   8.7  
At5g25910.1 68418.m03077 disease resistance family protein conta...    27   8.7  

>At5g41250.1 68418.m05013 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 561

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +1

Query: 241 RTSVPIE*-CYIVCAWFSNFL---LSVPIVFFFVNWLAISFPIFFIYN 372
           RTS  IE  C  +C+ F  FL   L    +FFF+ +L +SF     YN
Sbjct: 8   RTSKTIEDSCIHLCSVFFRFLYYTLPALFLFFFLLYLCLSFTTGISYN 55


>At5g25910.1 68418.m03077 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-5D [Lycopersicon
           esculentum] gi|3894393|gb|AAC78596;
          Length = 811

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 307 VPIVFFFVNWLAISFPIFFIYN--IVMLRLRRDL 402
           +P++F F    +I FP F  YN    +L L+RDL
Sbjct: 4   LPLLFIFFFLTSIPFPAFSQYNDRSTLLNLKRDL 37


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,095,098
Number of Sequences: 28952
Number of extensions: 247024
Number of successful extensions: 510
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)