Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30616
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    34   0.022
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    31   0.15 
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    30   0.27 
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    28   1.1  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    28   1.4  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   1.9  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    27   2.5  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   3.3  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    26   4.4  
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|...    26   5.8  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    26   5.8  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    25   7.7  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   7.7  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   7.7  

>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = +1

Query: 445 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 624
           EEKR+++EE++K  + +LQA  +  K   N  + KKS        +   +  KE+ + EK
Sbjct: 138 EEKRRKIEESDKWHRVLLQA--EGKKLKDNEQLLKKSIRRKEKEKKKSSDAWKERKDNEK 195

Query: 625 KISL 636
           K  L
Sbjct: 196 KAML 199


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +1

Query: 439 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 615
           + EEK +R  E + KR+A  +A ++A +       ++K++     NA+ E   K K + E
Sbjct: 620 EAEEKAKREAEEKAKREAEEKAKREAEEKAKR-EAEEKAKREAEENAKREAEEKAKREAE 678

Query: 616 EEKKISLSIRIKPLTIE 666
           E  K     ++K  T E
Sbjct: 679 ENAKREAEEKVKRETEE 695



 Score = 29.5 bits (63), Expect = 0.47
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 439 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 615
           + EEK +R  E + KR+A  +A ++A +       ++K++     NA+ E   K K + E
Sbjct: 636 EAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEENAKREAEEKVKRETE 694

Query: 616 EEKK 627
           E  K
Sbjct: 695 ENAK 698



 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 439 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 615
           + EEK +R  E + KR+A  +A ++A +       ++K++      A+ E   K K + E
Sbjct: 572 EAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEEKAKREAEEKAKREAE 630

Query: 616 EEKK 627
           E+ K
Sbjct: 631 EKAK 634



 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +1

Query: 439 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQK-KSENFGLSNAQLERNKTKEQLE 615
           + EEK +R  E + KR+A  +A ++A +       +K K E    +  + E N  +E  E
Sbjct: 612 EAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEE 671

Query: 616 EEKK 627
           + K+
Sbjct: 672 KAKR 675



 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +1

Query: 439 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 615
           + EEK +R  E + KR+A   A ++A +       ++K++      A+ E   K K + E
Sbjct: 580 EAEEKAKREAEEKAKREAEENAKREAEEKAKR-EAEEKAKREAEEKAKREAEEKAKREAE 638

Query: 616 EEKK 627
           E+ K
Sbjct: 639 EKAK 642



 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +1

Query: 439 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 615
           + EEK +R  E   KR+A  +A ++A +       ++K++      A+ E   K K + E
Sbjct: 588 EAEEKAKREAEENAKREAEEKAKREAEEKAKR-EAEEKAKREAEEKAKREAEEKAKREAE 646

Query: 616 EEKK 627
           E+ K
Sbjct: 647 EKAK 650



 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +1

Query: 439 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 615
           + EEK +R  E + KR+A  +A ++A +       ++K++      A+ E   K K + E
Sbjct: 604 EAEEKAKREAEEKAKREAEEKAKREAEEKAKR-EAEEKAKREAEEKAKREAEEKAKREAE 662

Query: 616 EEKK 627
           E  K
Sbjct: 663 ENAK 666



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +1

Query: 448 EKRQRLEEAEK-KRQAMLQAMKDASKTGPNFTIQK-KSENFGLSNAQLERNKTKEQLEEE 621
           E++ RLE  E  KR+A  QA ++A +       +K K E    +  + E N  +E  E+ 
Sbjct: 550 EEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKA 609

Query: 622 KK 627
           K+
Sbjct: 610 KR 611


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +1

Query: 439 DIEEKRQRLEEAEKKRQAMLQAMKD----ASKTGPNFTIQKKSENFGLSNAQLERNKTKE 606
           ++EEK   LE A+   Q ++ ++KD     +K       +  ++  G+S+A L + K K 
Sbjct: 162 ELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSA-LSKKKKKR 220

Query: 607 QLEEEKKISLSIRIKPLT 660
             + +KK S    I+  T
Sbjct: 221 NRKNQKKKSTKQNIEATT 238


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = +1

Query: 463 LEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 624
           +EE E+ R+  + A  D +  G    +  +S+  G  +  +++ KTK+QLEEE+
Sbjct: 197 VEEQERLRKETIAAFHDVN--GNKDAVSNESDEDG--DFLVKKEKTKKQLEEEE 246


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +1

Query: 451 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKE-QLEEEKK 627
           ++++LE   K +   LQ ++D  KT  +      S +     A LE  +  E ++EE K 
Sbjct: 29  QKEKLEGDLKTQIKKLQRLRDQIKTWAS------SNDIKDKKALLENRRLIEAKMEEFKA 82

Query: 628 ISLSIRIKPLTIEGLSV 678
           +   ++IK  + EGLS+
Sbjct: 83  VEREMKIKAFSKEGLSI 99


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +1

Query: 451 KRQRLEEAEKKRQAMLQAMKDAS---KTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 621
           K   +   +++R A +QA+ D S   +T  +   + +SEN GL N  ++     +QLE+E
Sbjct: 232 KDHEILRLKEERTAAMQAIDDISGTIETIKSDCYKVESENKGLINEVMDMRNFVQQLEQE 291


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +1

Query: 529 PNFTIQKKSENFGLSNAQLERNKTKEQLEE-EKKISLSIRIKPLTIEGL 672
           P FTI++K +NF ++N   ERN   ++L   +  ++  + ++   I+ L
Sbjct: 490 PGFTIEQKDKNFSINN---ERNNFLQKLSTLDSSLAALVNVQRKLIKAL 535


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 291 PLFAPFVDVFLQLFIQVRPLLVLTLDEFWISLTLLFRSG 175
           P+FA  +   L LF+Q+ P + +    FW S+ L+  +G
Sbjct: 796 PIFAYVISKCLNLFMQIDPSIGVA---FWSSMVLVVAAG 831


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 62  SLGTGSWTGSTATLECGAAA 3
           ++GTG W GS  TL  G AA
Sbjct: 96  AIGTGVWVGSKNTLREGGAA 115


>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
           Snu23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/69 (21%), Positives = 36/69 (52%)
 Frame = +1

Query: 442 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 621
           I EKR  LEE +++ +   + + +  K    ++++++ E +   + +LE  K + + ++ 
Sbjct: 65  IIEKRATLEEVKERMEYWRRQLLEPEKGSEEYSLKERVERY---HQELEAKKLRRKQKKV 121

Query: 622 KKISLSIRI 648
            K   S R+
Sbjct: 122 NKEKNSPRL 130


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +1

Query: 445 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTK--EQLEE 618
           EEK +++EE E   +   + ++D  K+    +++K S       A+ +R+ +   E LE+
Sbjct: 132 EEKDRKIEEGELTSEEEKEPIQDLRKSHKRKSVEKSSVPNKKHKAERKRSPSPKIEILED 191

Query: 619 EKKI 630
           +++I
Sbjct: 192 DEEI 195


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 62  SLGTGSWTGSTATLECGAAA 3
           ++GTG W GS+ +L  G AA
Sbjct: 96  AIGTGVWVGSSKSLYRGGAA 115


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 557 SLFFWMVKLGPVLLASFMAWSIAW 486
           SL+FW   L P    +F++W + +
Sbjct: 111 SLYFWTAYLSPPKYRAFLSWFLGY 134


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 109 CWLFIECRTGRSRSLSHSALVLGPAAQRRWNV 14
           CW  I    G S  L+  AL+L PA+    NV
Sbjct: 292 CWWIIPMALGSSAGLACRALLLNPASVTYPNV 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.130    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,878,103
Number of Sequences: 5004
Number of extensions: 27002
Number of successful extensions: 156
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)